Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02415 ATGGAGGGTGTGATGAATAAGGGGTTGTTGGAGTCTGTGAAGAAGTCGGCGCCGCCACCTTTCTTGTTGAAGACGTACATGCTGGTGGAGGATCCGGCCACCGACGACGTCGTATCGTGGAACGCTGACGGCACGGCGTTTGTGGTGTGGCAGACGGCGGAGTTTTCCCGTGATCTGCTACCGAAACTCTTTAAGCACAGCAACTTCTCCAGCTTTGTGAGGCAGCTCAATACCTATgGTTTCCGCAAAGTTGCAACAAATAGATGGGAATTTTGCAATGAGCGATTTAGAAAGGGTAAGAAAGAGCTGCTATGTGAGATTCGACGAAGAAAAGCTTGGTCCAGCAAGCAAAAGGAGCAGCAAAAACAAGTTAATAATACACCATTAGTCCCTCAAGAATCCGATGAAGATCAAAGGTCTTCATCTACGACGTCGTCTTCTGGTTATACTACTCTTGTGGATGAAAACAAGAGACTGAAGACGCAGAATGGAGTGCTCATCTCTGAGCTCACCATCATGAGAAGGAAATGTAAGGAGCTGCTTGATTTGATGGCCCAATATGGACATCCAAAGAAACAGGAGAAGCAAGAAGATGAGAGGCCAATGCTATTTGGTGTCAGACTTGAAGTTCAAGGAGAAAGAGATATCAAGAGGAAGAGAGCTGAGATTACTGAAACTGCAACCATTTTGCTGTCTCAGCcatgcaaata 710 0.4563 MEGVMNKGLLESVKKSAPPPFLLKTYMLVEDPATDDVVSWNADGTAFVVWQTAEFSRDLLPKLFKHSNFSSFVRQLNTYGFRKVATNRWEFCNERFRKGKKELLCEIRRRKAWSSKQKEQQKQVNNTPLVPQESDEDQRSSSTTSSSGYTTLVDENKRLKTQNGVLISELTIMRRKCKELLDLMAQYGHPKKQEKQEDERPMLFGVRLEVQGERDIKRKRAEITETATILLSQPCK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02415 236 MobiDBLite consensus disorder prediction 115 150 - -
Bva13g02415 236 Gene3D - 13 111 IPR036388 -
Bva13g02415 236 MobiDBLite consensus disorder prediction 118 150 - -
Bva13g02415 236 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g02415 236 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g02415 236 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 5 236 - -
Bva13g02415 236 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Bva13g02415 236 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 236 IPR027725 -
Bva13g02415 236 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g02415 236 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g02415 236 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g02415 236 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02415 Bva-Chr13 18287930 18290100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02415 18 187 HSF AT2G41690 59.116 1.28e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva13g02415 HSF_DNA-bind 2.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02415 K09419 - qsu:112013936 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02171 04 20935819 20937620 Bva13g02415 13 18287930 18290100 BWGD
Bva13g02415 13 18287930 18290100 Bva13g02415 13 18287930 18290100 ECH