Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02399 atGGGAACTCCGGAATTTCCAGATTTGGGAAAGCATTGCACTGTTGAGGATTGCAAACAGATTGATTTCCTGCCGTTCACATGCGATCGCTGTAATAAGGTATTTTGTTTGGAGCATAGAAGTTATGCTAAACATCAGTGTCCCAAAGCTGACAGAAACGATGTCACTGTTGTCATATGTCCTCTTTGTGCCAAAGGAGTACGCCTAATTCCTGATCAAGATCCAAACATCACTTGGGACAATCATGTTAACACTGACTGTGATCCATCAAATTATGAGAAAgtcacaaagaagaaaaagtgcCCTGTCCCGGGATGCAAAGATATCCTTGCATTCTCAAACACAATCAAATGCAGGGACTGCATGGTGGACCATTGCTTGAAGCACCGGTTTGGACCTGATCACAAATGTCCTGGACCAAAAAAGTTGGAAAcaagtttttcatttatgaGTCTTATGAATAGGAATAAAAAACAGGAGTTGAAGCCAAGTCCAGCTTCAACCACATCTTCATCTAGATGGACTACAAGCTTTCGTAATGTGGCTTCAAATATTCGAGCTTCAGCCGAAGCAGGCATTTCAAAGTTGAGCAGTGAAATTAACCAAGCTTGGCATACAAAGGACGGGGTGGGACAGAGCAGTAGCAGTACAAACGGAACTGGTCTAGTGGAGCAATGCCCTCAGTGCGGTGCAAAGTTTTCCTCAGTTACTACCTTGGTGGATCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACAGATCTGAGGTAAAGAAGGTGACAATTGATGTCTGTCCCAAGTGTAGTAGAGGATTTCGAGACCCGGTTGCCCTTGTGGAGCATGTTGAGAGGGATCACGGTGGAAGTTCAagagcata 875 0.4206 MGTPEFPDLGKHCTVEDCKQIDFLPFTCDRCNKVFCLEHRSYAKHQCPKADRNDVTVVICPLCAKGVRLIPDQDPNITWDNHVNTDCDPSNYEKVTKKKKCPVPGCKDILAFSNTIKCRDCMVDHCLKHRFGPDHKCPGPKKLETSFSFMSLMNRNKKQELKPSPASTTSSSRWTTSFRNVASNIRASAEAGISKLSSEINQAWHTKDGVGQSSSSTNGTGLVEQCPQCGAKFSSVTTLVDHVQKVHERSGNRSEVKKVTIDVCPKCSRGFRDPVALVEHVERDHGGSSRA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02399 291 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Bva13g02399 291 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Bva13g02399 291 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Bva13g02399 291 Pfam C2H2-type zinc finger 225 247 - -
Bva13g02399 291 SMART c2h2final6 99 129 IPR013087 -
Bva13g02399 291 SMART c2h2final6 262 285 IPR013087 -
Bva13g02399 291 SMART c2h2final6 224 247 IPR013087 -
Bva13g02399 291 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Bva13g02399 291 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Bva13g02399 291 Gene3D Classic Zinc Finger 194 288 - -
Bva13g02399 291 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 291 - -
Bva13g02399 291 SUPERFAMILY AN1-like Zinc finger 93 144 IPR035896 -
Bva13g02399 291 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 291 - -
Bva13g02399 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 290 IPR013087 -
Bva13g02399 291 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Bva13g02399 291 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
Bva13g02399 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 252 IPR013087 -
Bva13g02399 291 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Bva13g02399 291 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Bva13g02399 291 Gene3D - 86 167 IPR035896 -
Bva13g02399 291 Gene3D - 2 58 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02399 Bva-Chr13 18144536 18147072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02399 1 291 C2H2 Transcription Factor Family AT2G41835 64.948 8.86e-130 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva13g02399 zf-AN1 9.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02399 - - mnt:21400983 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02184 04 21018208 21018960 Bva13g02399 13 18144536 18147072 BWGD
Bva13g02399 13 18144536 18147072 Bva13g02399 13 18144536 18147072 ECH