Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02398 ATGGCTGAAAGAGGCGGAGACCGTGGTGGCTTTGGTCGTGGGTTCGGTGGCCGTGGCCGCGGAGACCGTGGTCGTGGTCGCCGTAGAAATGCTGGCCGCCGCGAAGAAGAGGAGAAGTGGGTTCCTGTTACAAAGCTCGGTCGACTCGTTAAGGAGGGAAGAATCCGCAGCCTGGAGCAGATTTACCTCCACTCACTCCCCATCAAGGAGCACCAGATCGTGGATACCTTGGTTGGTCCCTCCCTTAAGGACGAGGTCATGAAGATTATGCCTGTCCAAAAGCAGACCCGTGCCGGTCAGAGGACCCGATTCAAGGCCTTCGTTGTCGTCGGCGATGGTAACGGACATGTGGGACTTGGCGTCAAGTGCAGTAAGGAAGTCGCCACCGCCATTCGTGGTTCTATCATATTGGCCAAGCTCTCTGTTATTCCTGTGAGGAGAGGCTACTGGGGTAACAAGATCGGAAAGCCCCACACAGTCCCCTGCAAGGTCACCGGAAAGTGTGGTTCAGTCACCGTGCGTATGGTTCCAGCTCCTCGTGGTGCTGGAATCGTTGCTGCTAGGGTGCCTAAGAAGGTTTTGCAGTTCGCAGGAATAGAGGATGTTTTCACCTCTTCAAGGGGTTCGACTAAGACTCTTGGAAACTTCGTCAAGGCAACATTTGATTGTTTGCTGAAAACCTATGGGTTCTTGACACCTGAGTTCTGGAGGGAGACCCGCTTCACCAAGTCGCCATTCCAAGAGTACACTGATCTACTGGCTAAACCAACTGGAAAGGCACTCATCCTTGAGGATGACCGGGTCGATGCTTA 812 0.5406 MAERGGDRGGFGRGFGGRGRGDRGRGRRRNAGRREEEEKWVPVTKLGRLVKEGRIRSLEQIYLHSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWRETRFTKSPFQEYTDLLAKPTGKALILEDDRVDA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02398 270 SUPERFAMILY Ribosomal protein S5 domain 2-like 158 238 IPR020568 -
Bva13g02398 270 SUPERFAMILY dsRNA-binding domain-like 78 147 - -
Bva13g02398 270 TIGRFAM uS5_euk_arch: ribosomal protein uS5 35 242 IPR005711 GO:0003735|GO:0006412|GO:0015935
Bva13g02398 270 Gene3D - 145 237 IPR014721 -
Bva13g02398 270 Gene3D - 39 144 - -
Bva13g02398 270 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 268 - -
Bva13g02398 270 MobiDBLite consensus disorder prediction 1 37 - -
Bva13g02398 270 Pfam Ribosomal protein S5, N-terminal domain 82 146 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva13g02398 270 ProSitePatterns Ribosomal protein S5 signature. 99 131 IPR018192 -
Bva13g02398 270 PANTHER RIBOSOMAL S SUBUNIT 1 268 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva13g02398 270 ProSiteProfiles S5 double stranded RNA-binding domain profile. 82 145 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva13g02398 270 Pfam Ribosomal protein S5, C-terminal domain 166 238 IPR005324 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02398 Bva-Chr13 18141389 18143654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02398 36 258 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 89.238 1.96e-150 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02398 K02981 - csv:101210000 465.692