Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02392 ATGGGTAATTGTTGCGTAACTCCTTCCGGGACtaaagagaacaaaaagggaaagaagaaacagaacCCATTTTCGATCGATTACGGGCTCAATCACAATGTTAATGGTGGAGGCAAGCTCTCCGTTCTTAAGGACCCAACCGGCCGTGAAATTGAGTTCAAGTACGAGCTGGGTCGTGAGCTGGGAAGAGGAGAATTCGGAATCACCTACCTGTGCACCGATAAAGAAACGGGTGAGACGCTCGCCTGCAAATCGATATCGAAGAAGAAGTTGAGAACCGCCGTTGATATCGAGGATGTGAGGAGAGAGGTTGAGATCATGAAGCATTTGCCAGAGCATCCAAATATCGTAACCTTAAAGGATACTTATGAGGACGACAATGCGGTCCATCTTGTGATGGAATTATGCGAGGGAGGAGAGTTGTTCGATCGCATCGTAGCACGCGGCCACTACACAGAACGTGCTGCCGCCGCGGTCACACGGACCATCGTTGAAGTTGTGCAGAATTGCCACAAACATGGAGTGATGCATCGGGATCTCAAACCTGAGAACTTTCTGTTTGCAAACAAGAAGGAAACAGCACCTCTGAAGGCCATTGATTTTGGATTGTCAGTGTTCTTCAAACCTGGTGAAAGATTTGATGAGATAGTTGGAAGTCCATATTATATGGCTCCTGAGgttttaaagagaaattatgGCCCAGAAGTAGATATCTGGAGTGCTGGAGTAGTTCTTTACATCCTACTTTGTGGTGTTCCACCGTTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCCATTATACGATCAGTTCTGGACTTCAGACGGGACCCCTGGCCAAAAGTTTCCGATAGTGCAAAAGATCTCGTGAAGAAGATGCTTGATCCTGATCCTAAGCGGCGGCTCAGTGCTCAGGAAGTGTTAGATCATCCATGGATACAGAATGCAAAGAAAGCTCCCAATGTTTCGTTGGGGGAAACTGTAAAAGCTAGGCTCAAGCAATTCTCCGTAATGAACAAGCTTAAGAAAAGAGCTCTGAggGTGATCGCAGAGCATTTGTCAGTAGAAGAAACTGCTGGAATAAAGGAAAGATTCCAGCTGATGGATACTGGGAATAAAGGCAAAATTAACATTGACGAACTACGCGTAGGCTTGCATAAGCTAGGTCATCAGATTCCGGATGCAGATCTTCAAATTCTGATGGAAGCTGGTGACGTAGATAAGGATGGACACCTAGATTACGGAGAATTTGTAGCCATTACTGTCCATCTGAGAAAAATGGACAATGATGAGCACCTTCACAAAGCCTTCAAATTCTTTGATAAGAATGAAACTGGTTATATAGAAATTGAGGAGCTGCGTGATGCCTTAGCTGATGAAGTTAATCCTAATAGCGAAGAAGTTATCAATGCAATTATGCATGATGTGGACACAGATAAGGATGGACGGATAAGCTATGAGGAATTTGCTGCAATGATGAAAGCTGGGACAGATTGGAGAAAAGCATCAAGGCAGTATTCACGAGAGAGATTTAATAGTCTCAGTTTGAAACTGATGCGTGACGGATCATTGCAATG 1577 0.4337 MGNCCVTPSGTKENKKGKKKQNPFSIDYGLNHNVNGGGKLSVLKDPTGREIEFKYELGRELGRGEFGITYLCTDKETGETLACKSISKKKLRTAVDIEDVRREVEIMKHLPEHPNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQNCHKHGVMHRDLKPENFLFANKKETAPLKAIDFGLSVFFKPGERFDEIVGSPYYMAPEVLKRNYGPEVDIWSAGVVLYILLCGVPPFWAETEQGVAQAIIRSVLDFRRDPWPKVSDSAKDLVKKMLDPDPKRRLSAQEVLDHPWIQNAKKAPNVSLGETVKARLKQFSVMNKLKKRALRVIAEHLSVEETAGIKERFQLMDTGNKGKINIDELRVGLHKLGHQIPDADLQILMEAGDVDKDGHLDYGEFVAITVHLRKMDNDEHLHKAFKFFDKNETGYIEIEELRDALADEVNPNSEEVINAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFNSLSLKLMRDGSLQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02392 525 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Bva13g02392 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Bva13g02392 525 CDD STKc_CAMK 54 312 - -
Bva13g02392 525 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Bva13g02392 525 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Bva13g02392 525 Pfam EF-hand domain pair 361 421 IPR002048 GO:0005509
Bva13g02392 525 Pfam EF-hand domain pair 431 494 IPR002048 GO:0005509
Bva13g02392 525 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 10 509 - -
Bva13g02392 525 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Bva13g02392 525 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Bva13g02392 525 SUPERFAMILY Protein kinase-like (PK-like) 54 321 IPR011009 -
Bva13g02392 525 Gene3D - 322 496 - -
Bva13g02392 525 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g02392 525 Gene3D Transferase(Phosphotransferase) domain 1 141 321 - -
Bva13g02392 525 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g02392 525 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g02392 525 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Bva13g02392 525 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Bva13g02392 525 MobiDBLite consensus disorder prediction 1 21 - -
Bva13g02392 525 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Bva13g02392 525 SUPERFAMILY EF-hand 337 506 IPR011992 -
Bva13g02392 525 CDD EFh 432 494 IPR002048 GO:0005509
Bva13g02392 525 SMART efh_1 468 496 IPR002048 GO:0005509
Bva13g02392 525 SMART efh_1 396 424 IPR002048 GO:0005509
Bva13g02392 525 SMART efh_1 360 388 IPR002048 GO:0005509
Bva13g02392 525 SMART efh_1 432 460 IPR002048 GO:0005509
Bva13g02392 525 PANTHER SERINE/THREONINE-PROTEIN KINASE 10 509 - -
Bva13g02392 525 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02392 Bva-Chr13 18116213 18120603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02392 1 525 EF-hand Containing Proteins AT5G19450 80.979 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bva13g02392 Pkinase 6.8e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02392 K13412 - tcc:18598981 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02189 04 21047983 21054891 Bva13g02392 13 18116213 18120603 BWGD
Bva13g02392 13 18116213 18120603 Bva13g02392 13 18116213 18120603 ECH