Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02388 ATGAAACTGAATTTGGATGGCGCACAAGATTCAGAACCACATATAAGAAGTAAAATCGTATCTGCAACTAGCACTCAAGGCTGGTGGCATGGCATGAGACAGGAGGCCTCCTCTAGAGATATTATTGgggaagataaaataatatcatttgaGCCAAAATCTTTGGATGCTGCTAGTTTTGGGACCCAATCCAACAAATTACAGGTTAAGGGTGCACTATGTATATATGAAGAGAAGGACACCAAAGAGAAAGCAGAAGGAAAAACAGGTGAAAAACATCAAGAAAAGCAACTTGTTATCCCTAGTATGCCTCCAACAGCAAATGAATTTCTTGCGCCAGCTTCACAGTTGGAGCCTGCTGCTGGTCACTCAATGTCAATGGTATGCGGATCTTACCCATATTCAGATCCATGTTATGGAGGAGCAATCCCTACTTCTGGAACTCACTCTTTGGTACCTCTTCATGGTCTAGGATTAGATTCACCCGCTCAAATGGTTTTACCACTGGGAATGGCAGAAGAACCTGTTTATGTCAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCAATTGCGTGCTAAGGCTGAATTGGAGAAGAAGCTAATAAGAGTCAGGAAGCCCTACCTTCATGAGTCTCGACATTTGCATGCTATGAGAAGACCAAGAGGCTGTGGCGGCCGTTTTGTGGCCACAAAGAAGCTTGATGCTAGTGCTGCAAACACTGCAACCTGCAGCAAGCAAAGTGTTACTTCTGACCACAGAACCGTGTATTCCAACTCCAGCACTGGCACTGTTGATTCAAGCTACACGTCTCATCTGCAGGAATTGCACCAATCCATGATGAACTCCAGTTCCAGCAGCAACAACCACTATTCACACATTCAAGGATTTCATCAATCTCTCTCAGGTGACACAACAAATAGAGGAAACTTCTCTCGTCAGCAGTCTAAAAGCCTTGACTTCACTGGCATTTGCAGGGAACTCTtcataaaata 998 0.4319 MKLNLDGAQDSEPHIRSKIVSATSTQGWWHGMRQEASSRDIIGEDKIISFEPKSLDAASFGTQSNKLQVKGALCIYEEKDTKEKEGKTGEKHQEKQLVIPSMPPTANEFLAPASQLEPAAGHSMSMVCGSYPYSDPCYGGAIPTSGTHSLVPLHGLGLDSPAQMVLPLGMAEEPVYVNAKQYHGILRRRQLRAKAELEKKLIRVRKPYLHESRHLHAMRRPRGCGGRFVATKKLDASAANTATCSKQSVTSDHRTVYSNSSTGTVDSSYTSHLQELHQSMMNSSSSSNNHYSHIQGFHQSLSGDTTNRGNFSRQQSKSLDFTGICRELFIK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02388 331 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Bva13g02388 331 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Bva13g02388 331 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Bva13g02388 331 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 58 307 IPR001289 GO:0003700|GO:0006355
Bva13g02388 331 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Bva13g02388 331 Gene3D - 171 232 - -
Bva13g02388 331 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1 58 307 - -
Bva13g02388 331 MobiDBLite consensus disorder prediction 281 313 - -
Bva13g02388 331 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Bva13g02388 331 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02388 Bva-Chr13 18082177 18086502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02388 121 250 CCAAT-HAP2 Transcription Factor Family AT3G20910 55.303 6.75e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bva13g02388 CBFB_NFYA 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02388 K08064 - tcc:18598988 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02388 13 18082177 18086502 Bva13g02388 13 18082177 18086502 ECH