Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02384 ATGAATTACTTGAGTATTAAGACTGCAGATTCTTTTGCAAGCTTGCTTGAGCTTGCAGCCAATAATGATGTTGAAGGTTTCAAAGGATTGATTCAGCGTGATCCATCCTGTGTAGATGAAGTGGGACTATGGTATGGTCGCCAGAAAGGGTCGAAACAGATGGTCAATGAACACAGAACTCCTTTGATGGTTGCTGCTACTTATGGAAGCATTGATGTTATGAAACTGATTCTTTCATTATCTGATGCTGACATTAATCGACCTTGTGGTCTTGATAAGAGCACTGCCCTTCATTGTGCGGCATCAGGTGGTGCTGTAAATGCTGTTGATGTTGTGAAACTGCTTCTAGCGGCAGGTGCTGATCCGAATTGTGTGGATGCAAATGGTCATCGCCCTGTTGATGTCATTGTTGCCCCTCCTAGGCTTGAGGAGGTTAAAAGTAGTCTTGAAGAACTGCTTCAAACTGATGGTTCAATGGCAGGGTGTAATCTTAGGGTGATCACAACCACATCAAATACAAACTCTCCGCCTTTATCAATTTCTCCAGATAATGGGTCTCCATCGGCTGCGCTGGATTTCCAATTGAAGTTGAAGTCAAATGATGCCCCTGTTTCTTCTGCATCAGAGAAGAAGGAATATCCTGTTGATCCGTCTCTTCCAGATATCAAGAATAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAAGTCAGACCATGTTCACGTGCCTATTCTCATGATTGGACTGAATGCCCTTTCGTCCATCCAGGAGAGAATGCTCGAAGAAGGGACCCAAGGAAGTTCCATTATAGCTGTGTCCCATGTCCTGATTTTCGGAAGGGGGCTTGCCGACGTGGAGATATGTGTGAATATGCTCATGGAGTTTTTGAATGCTGGCTTCATCCAGCACAATATAGAACCCGCCTATGCAAGGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAACTTCGTCCTTTATATGTTTCAACTGGTTCTGCTGTTCCCTCTCCTCGCTCAAGCTCATCTTCTGCGATGGATTTTGCTGCGGCAATGAGCCTTCTGCCTGGTTCTCCTTCTTCAATGTCCGTCATCTCTCCTTCACCATTCACTCCACCTATGTCTCCATCCGCCAATGGCATGTCACAGTCTTCTGTTGCTTGGCCTCAGCCTAATGTCCCGGCCTTGCATCTGCCAGGAAGTAATCTTCATTCCAGTCGTTTGAGATCATCATTCAATGCTAGAGATATTCATGTGGAAGACTTTGATATGTTGTCAGACTATGATGTTCAACAGCAGCAGCTCCTTAACGAATTGTCTTGCCTCTCTCAACAACCTATGAATTCTAATTCTTTAAACCGCTCAGGTCGTATGAAGACCTTGGCCCCTTCAAATCTTGATGATCTTTTTTCTACTGAGAGCTCTTCTCCTCGGTATGCTGATCCTGCACTGGCATCTGCCGTTTTCTCCCCCACTCACAAATCAGCGGTTCTTAATCAAtttcagcagcagcagcagcagcaaagCATGCTATCACCTGTGAATACAAGTTTTTCTTCCAAGAATGTTGAGCATCCTTTACTGCAAGCCTCTTTTGCATCAGGAAGGATGTCTCCGCGAAATGTGGAACCTATCTCTCCTATGGGCACCAGAGTTTCCTTGCTAGCTCAACGTGAGAAACAGCTACAATTTCGTAGCCTTAGCTCACGGGAACTTGGCTCCAACTTGTCTGCTGCTCCTGGGTCCCCGGTCAATTCTTGGTCTAAGTGGGGATCCTCCAATGGTAAGTTGGATTGGGCGGTCAATACAGATGAATCGGGTAAGCTTCGCAGATCATCTTCCTTTGAGCTCGGGAACAATGGCGAGGAGCCTGATTTGTCATGGGTGCAGTCACTGGTTAAAGAATCTCCAACTGAGATTAAAGAGAAGTTGGCAACGACAGTCTCAGGTGTTGCAGCGGCTGGAGCCTCCAGTGATGGATCAAATATGAACACACAAATGGAATCTGTTGATCGTACTGTGTTAGGAGAATGGCTTGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTG 2102 0.4491 MNYLSIKTADSFASLLELAANNDVEGFKGLIQRDPSCVDEVGLWYGRQKGSKQMVNEHRTPLMVAATYGSIDVMKLILSLSDADINRPCGLDKSTALHCAASGGAVNAVDVVKLLLAAGADPNCVDANGHRPVDVIVAPPRLEEVKSSLEELLQTDGSMAGCNLRVITTTSNTNSPPLSISPDNGSPSAALDFQLKLKSNDAPVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSSSSAMDFAAAMSLLPGSPSSMSVISPSPFTPPMSPSANGMSQSSVAWPQPNVPALHLPGSNLHSSRLRSSFNARDIHVEDFDMLSDYDVQQQQLLNELSCLSQQPMNSNSLNRSGRMKTLAPSNLDDLFSTESSSPRYADPALASAVFSPTHKSAVLNQFQQQQQQQSMLSPVNTSFSSKNVEHPLLQASFASGRMSPRNVEPISPMGTRVSLLAQREKQLQFRSLSSRELGSNLSAAPGSPVNSWSKWGSSNGKLDWAVNTDESGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATTVSGVAAAGASSDGSNMNTQMESVDRTVLGEWLEQMQLDHLVAQQN 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02384 700 PANTHER UNKEMPT FAMILY MEMBER 1 697 IPR045234 -
Bva13g02384 700 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Bva13g02384 700 Pfam Ankyrin repeats (3 copies) 42 126 IPR002110 GO:0005515
Bva13g02384 700 Gene3D - 271 334 - -
Bva13g02384 700 SUPERFAMILY Ankyrin repeat 13 137 IPR036770 -
Bva13g02384 700 SMART ANK_2a 10 39 IPR002110 GO:0005515
Bva13g02384 700 SMART ANK_2a 57 87 IPR002110 GO:0005515
Bva13g02384 700 SMART ANK_2a 92 124 IPR002110 GO:0005515
Bva13g02384 700 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Bva13g02384 700 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Bva13g02384 700 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Bva13g02384 700 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bva13g02384 700 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 697 - -
Bva13g02384 700 Gene3D - 8 159 IPR036770 -
Bva13g02384 700 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Bva13g02384 700 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Bva13g02384 700 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02384 Bva-Chr13 18062143 18066220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02384 11 693 C2H2 Transcription Factor Family AT5G12850 54.351 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva13g02384 Ank_2 4e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02384 13 18062143 18066220 Bva13g02384 13 18062143 18066220 ECH