Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02380 ATGGATACTTGTAGAAAGTCCCCTTTGAAGCCATGGAAGAAAGGGCCAACCAGGGGCAAAGGTGGCCCTCAGAATGCTTCATGCGAGTACCGAGGCGTTCGACAAAGAACATGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGGCTGTGGCTTGGTTCTTTTGCCACTGCCGAAGAAGCTGCCATGGCCTATGATGAGGCTGCAAGGAGACTCTATGGCCCCGATGCATACCTTAATCTTCCCCACCTTCAACCCAGCTCCAGTTCTCCTATCATCAAATCTCAGAAGTTCAAATGGTTGCCTTCAAAGAATTTCATTTCGATGTTTCCTTCTCGTGGATTACTCAATATAAATGCCCAACCTAGTGTTCACGTAATCCATCAAAGGCTACAACAACTAAAGCAAAATGGAATTCTGAGTCGAACCCCATCAAGTTCATCCTGTGATCCAAAGGCACAACCCCAAATTACAAGTAGCAAAAATCATGCAGAAAACCCTCCAACAGAAAAAGATGCTAAAATATCATCAGAAAACGTAGGGGATCTTCAGGAGAAACCCCAGATTGACCTGCATGAGTTTCTTCAACAGCTGGGCATACTGAAAGAGGAAGGGCATTCAGAGAAGACCGAGACTGATAGCTCAGGAAGTTCAACGGACCCTGAAGCTCTATCAAGAGATATCAGTGATCAACTTGGAGTATTTTCTGACAAGAATGTAAACTGGGAGGCATTGATCGAGATGAATGGAATGGCAGAAAATCAGGGATTAGATGTCACCCAATTTCAAGCATATGACACAAATGAGGAGCTTGCTTTCTCTACTTCCATTTGGAACTTCTA 854 0.4461 MDTCRKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPSSSSPIIKSQKFKWLPSKNFISMFPSRGLLNINAQPSVHVIHQRLQQLKQNGILSRTPSSSSCDPKAQPQITSSKNHAENPPTEKDAKISSENVGDLQEKPQIDLHEFLQQLGILKEEGHSEKTETDSSGSSTDPEALSRDISDQLGVFSDKNVNWEALIEMNGMAENQGLDVTQFQAYDTNEELAFSTSIWNF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02380 284 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Bva13g02380 284 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Bva13g02380 284 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Bva13g02380 284 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Bva13g02380 284 MobiDBLite consensus disorder prediction 144 185 - -
Bva13g02380 284 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Bva13g02380 284 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Bva13g02380 284 MobiDBLite consensus disorder prediction 1 28 - -
Bva13g02380 284 MobiDBLite consensus disorder prediction 144 168 - -
Bva13g02380 284 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Bva13g02380 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 281 - -
Bva13g02380 284 MobiDBLite consensus disorder prediction 208 234 - -
Bva13g02380 284 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Bva13g02380 284 MobiDBLite consensus disorder prediction 169 185 - -
Bva13g02380 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02380 Bva-Chr13 18045022 18046958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02380 5 284 AP2-EREBP Transcription Factor Family AT3G57600 53.521 7.94e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva13g02380 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02380 - - gmx:100801311 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02203 04 21120355 21121694 Bva13g02380 13 18045022 18046958 BWGD
Bva13g02380 13 18045022 18046958 Bva13g02380 13 18045022 18046958 ECH