Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02372 ATGGCTGACCCTTACTCCAATTTCTTCTCAGGTTTCTTCCAATTCAATCCCATCCACCATTACCCTCCACCTTCACCTTCCCCTTCCCCTTCTAACCCTTCTTCttctcatcatcatcaccacCACCATCCCTATCATCTTCACAGCTTCTTCAACAGCAGTAACAGTAGCATCAGCAGCAGCAATAGCGGTAGCAGCAGCTTTTTCCATTATCACCAGCAAAACCTTTCAGTTTCACCCCCTTCTCCTCCTCTCAGAGAAGCCCTTCCCCTTTTGAGCCTAACCCCGACGAAGCAAGACGACGATGATCTTCCCCTTCAAGAACAAGAGGAACTCCACTCTTGCACTGCCATGGATTTAGAGGACAGGATCCTTAGACTTCACAGTGATAAacccaaagaagaagaagacgatGATGATGACGTGGACACTGGTGTTACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCCTCGGTgctctcttcttcctctgagATCACTGATAAAGACCATGCTGCAGATGCTAGCACTGAGGATTCTGGGTTCATTTTCAACAGGCTTAACAAGGGCCAGTATTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCAACACAGTTTTCTTGCCCTGTTTGCTGCAAAACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCCACGGGGATGCTGAGGCTTCCTTGCTATTGTTGTGCACCAGGTTGCAGGAACAACATTGATCATCCAAGAGCAAAGCCCCTCAAGGATTTTAGAACCCTTCAAACACATTATAAGAGAAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGTAAGGCTTTTGCAGTGAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGCAAGCTTTGGTATTGTATCTGTGGGTCTGATTTCAAGCACAAGAGGTCCCTTAAAGATCATATAAAAGCTTTTGGGAGCGGCCATGCAGCATATGGGATCGATggatttgaagaagaagatgagcCTGCATCCGAAGTAGAGCAAGATAATGATGATCAGTCCACTCAGTA 1130 0.4345 MADPYSNFFSGFFQFNPIHHYPPPSPSPSPSNPSSSHHHHHHHPYHLHSFFNSSNSSISSSNSGSSSFFHYHQQNLSVSPPSPPLREALPLLSLTPTKQDDDDLPLQEQEELHSCTAMDLEDRILRLHSDKPKEEEDDDDDVDTGVTVALHIGLPSPSAAEMASVLSSSSEITDKDHAADASTEDSGFIFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDQSTQ 376
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02372 376 MobiDBLite consensus disorder prediction 20 46 - -
Bva13g02372 376 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 372 - -
Bva13g02372 376 SUPERFAMILY beta-beta-alpha zinc fingers 279 317 IPR036236 -
Bva13g02372 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 297 317 IPR013087 -
Bva13g02372 376 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Bva13g02372 376 SMART c2h2final6 213 235 IPR013087 -
Bva13g02372 376 SMART c2h2final6 297 317 IPR013087 -
Bva13g02372 376 MobiDBLite consensus disorder prediction 357 376 - -
Bva13g02372 376 Gene3D Classic Zinc Finger 212 235 - -
Bva13g02372 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 240 IPR013087 -
Bva13g02372 376 PANTHER ZINC FINGER PROTEIN WIP2 1 372 IPR043584 GO:0003700|GO:0010468
Bva13g02372 376 Gene3D Classic Zinc Finger 275 350 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva13g02372 Bva-Chr13 17993700 17996164 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02372 1 376 C2H2 Transcription Factor Family AT3G57670 59.951 2.60e-150 428
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva13g02372 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02372 - - gmx:100802907 529.635
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02208 04 21152037 21154743 Bva13g02372 13 17993700 17996164 BWGD
Bva13g02372 13 17993700 17996164 Bva13g02372 13 17993700 17996164 ECH
Bva13g02372 13 17993700 17996164 Bva09g00076 09 361914 364290 ECH