Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bva13g02372 | ATGGCTGACCCTTACTCCAATTTCTTCTCAGGTTTCTTCCAATTCAATCCCATCCACCATTACCCTCCACCTTCACCTTCCCCTTCCCCTTCTAACCCTTCTTCttctcatcatcatcaccacCACCATCCCTATCATCTTCACAGCTTCTTCAACAGCAGTAACAGTAGCATCAGCAGCAGCAATAGCGGTAGCAGCAGCTTTTTCCATTATCACCAGCAAAACCTTTCAGTTTCACCCCCTTCTCCTCCTCTCAGAGAAGCCCTTCCCCTTTTGAGCCTAACCCCGACGAAGCAAGACGACGATGATCTTCCCCTTCAAGAACAAGAGGAACTCCACTCTTGCACTGCCATGGATTTAGAGGACAGGATCCTTAGACTTCACAGTGATAAacccaaagaagaagaagacgatGATGATGACGTGGACACTGGTGTTACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCCTCGGTgctctcttcttcctctgagATCACTGATAAAGACCATGCTGCAGATGCTAGCACTGAGGATTCTGGGTTCATTTTCAACAGGCTTAACAAGGGCCAGTATTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCAACACAGTTTTCTTGCCCTGTTTGCTGCAAAACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCCACGGGGATGCTGAGGCTTCCTTGCTATTGTTGTGCACCAGGTTGCAGGAACAACATTGATCATCCAAGAGCAAAGCCCCTCAAGGATTTTAGAACCCTTCAAACACATTATAAGAGAAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGTAAGGCTTTTGCAGTGAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGCAAGCTTTGGTATTGTATCTGTGGGTCTGATTTCAAGCACAAGAGGTCCCTTAAAGATCATATAAAAGCTTTTGGGAGCGGCCATGCAGCATATGGGATCGATggatttgaagaagaagatgagcCTGCATCCGAAGTAGAGCAAGATAATGATGATCAGTCCACTCAGTA | 1130 | 0.4345 | MADPYSNFFSGFFQFNPIHHYPPPSPSPSPSNPSSSHHHHHHHPYHLHSFFNSSNSSISSSNSGSSSFFHYHQQNLSVSPPSPPLREALPLLSLTPTKQDDDDLPLQEQEELHSCTAMDLEDRILRLHSDKPKEEEDDDDDVDTGVTVALHIGLPSPSAAEMASVLSSSSEITDKDHAADASTEDSGFIFNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDQSTQ | 376 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bva13g02372 | 376 | MobiDBLite | consensus disorder prediction | 20 | 46 | - | - | |
Bva13g02372 | 376 | PANTHER | TESTA 1 PROTEIN, PUTATIVE-RELATED | 1 | 372 | - | - | |
Bva13g02372 | 376 | SUPERFAMILY | beta-beta-alpha zinc fingers | 279 | 317 | IPR036236 | - | |
Bva13g02372 | 376 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 297 | 317 | IPR013087 | - | |
Bva13g02372 | 376 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 215 | 235 | IPR013087 | - | |
Bva13g02372 | 376 | SMART | c2h2final6 | 213 | 235 | IPR013087 | - | |
Bva13g02372 | 376 | SMART | c2h2final6 | 297 | 317 | IPR013087 | - | |
Bva13g02372 | 376 | MobiDBLite | consensus disorder prediction | 357 | 376 | - | - | |
Bva13g02372 | 376 | Gene3D | Classic Zinc Finger | 212 | 235 | - | - | |
Bva13g02372 | 376 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 213 | 240 | IPR013087 | - | |
Bva13g02372 | 376 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 372 | IPR043584 | GO:0003700|GO:0010468 | |
Bva13g02372 | 376 | Gene3D | Classic Zinc Finger | 275 | 350 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bva13g02372 | Bva-Chr13 | 17993700 | 17996164 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bva13g02372 | 1 | 376 | C2H2 Transcription Factor Family | AT3G57670 | 59.951 | 2.60e-150 | 428 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Bva13g02372 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bva13g02372 | - | - | gmx:100802907 | 529.635 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bva04g02208 | 04 | 21152037 | 21154743 | Bva13g02372 | 13 | 17993700 | 17996164 | BWGD | |
Bva13g02372 | 13 | 17993700 | 17996164 | Bva13g02372 | 13 | 17993700 | 17996164 | ECH | |
Bva13g02372 | 13 | 17993700 | 17996164 | Bva09g00076 | 09 | 361914 | 364290 | ECH |