Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02365 ATGGAAAGTCCAAACAATTGGGCTGCATTTTCCTCTTATCTCACTGGCTCAACTTCCTCTTCTGCTCAAACCCCTCATCAGCTAACCACTACTCCATGTCCTGTTGGAACTGCTAACATTAACTACCAAGACATCTTGAAAGATCTTATGAAGCAACAAACTTCAAcgttaatGGATATGAACAAAGATAACCGTAAGGGTAAAGAAATTGTTGAAGCACCTTGCAGTGAGTCATGTCAAAAGGACAATAAAAAGTGTGAACGAAGAAGGAAATCCAAGAGCTCCATGTATCGGGGAGTTTGCAAGTATGGAAAGCGTTATTCCGCATTTCTGTGGGATAACACCACGAACGGTCCAAAACGAGCTATATCTAGAAACGAAGTTGAAGCAGCTAAAGCATATGACGTGGCAGCCATCAAGTTATGGGACAATTTTGCCTGTGCAAATTTTCCTAAGAATTGCtatgaaaaagaattagaGGAGATGAAGGACATGAGCAGAAATGACTATCTCAAGGCCATTAAAAGGAGGGATAATAAGATATCTAGCTGCTACTCACCTTATCGTGGAGTCTCAAGGAGCAAGACAAATATGAAGTGGCAATCTAGGGTAGGTAGAGGAAGGCGAATGCCATCCTTATACTTGGGAACATTTGACACCCAAGAGGAGGCAGCCAGGGCCTACGATATTGTGAAGATCAAATACAAGGGTCTAGAAGCAGCGActaatttcaatattaatagCTATGATGTCCCAAAGATCATTGCTTCAGATCTTCCAGTTGGGAAGAATAATGCAAACAAGCTGAAGCAATTCATAGTGAAGGAGAAATTGATCAGAAGTAACTGTCAGAATGAAGAATTAGCCAATCAAAACCCTAGTATTGGATTCGCTGGCAACGTTACAGCCCATGATATTAACCCTCATACTGTTGGGGGTTCTCCTCCAGTCGCAATGATGTTGCCACCGGCCACGTGGACAGCTCTTGGGAAATCTAGCGATATATCCATGACTGAGTTTCAGCTTCAACCATCTCAACCTCAACCTCAACCTCAACCTCAACCTCAACCGCAACCGCAACCGCAACCGCAACCGCAGCCACAAGCACAACCTCAACCACAACAAAGTGATAACTTTTTCATTGATCTTGATGAGTTTCAAGATCTTAATATCGACTTGGATCAGTGGGAACTGAACATTCAAAAGAAGGAGATTTTCAGCAACAAGTTCAATCTTGGAGGTGATGATTCTCCAATTAATGGCCTCGTCGATGATACTCCAGCAGGTTTCAGTGACTTGCAACTACAGCTACATCCGGTGTTTGAACCAAATTCAGATTCTTACCAAGATCCTTTTGAGGACTCTAGCATGCAGCTCGGTAGTGATCATGTCCAATATTATCCAATGTCGGATTCTGATCAAACTGAAACTACTTCAGAGTCCCAGCTCATGACTAAAGAAGATTTACAAGACATAGATATTAATGATTATCTCGAGAGTTGTTCAGAGAAAACTAAAGGGAACTCTGCTAATGATAGTGCTGCTAACATGGGTTCTAGCTCTCATCAAATGAACACTGCTTTCCAACCGCTGACGACTGAAGACATACAAGGTACAGATATCAATGAAGTTCTTAAGAGTTTTTCTGAGGAAACTAATGGGAACAATAATGGTAGTGCTGCCAACACAATGGTTCCTGAAAATGGAGCTGTCCAGATTAGACCAGAAGATGGAAATAGGCCTCTCTTGCAAGGAACCGAGTGCAACAGCTACAACACTCTTCCATCCAATGAATTAGTCTACCATTCAGAAGGCGAAGAGTGCCTTGATGATTTGTTTGGGGGGTTCTGCTG 1853 0.4177 MESPNNWAAFSSYLTGSTSSSAQTPHQLTTTPCPVGTANINYQDILKDLMKQQTSTLMDMNKDNRKGKEIVEAPCSESCQKDNKKCERRRKSKSSMYRGVCKYGKRYSAFLWDNTTNGPKRAISRNEVEAAKAYDVAAIKLWDNFACANFPKNCYEKELEEMKDMSRNDYLKAIKRRDNKISSCYSPYRGVSRSKTNMKWQSRVGRGRRMPSLYLGTFDTQEEAARAYDIVKIKYKGLEAATNFNINSYDVPKIIASDLPVGKNNANKLKQFIVKEKLIRSNCQNEELANQNPSIGFAGNVTAHDINPHTVGGSPPVAMMLPPATWTALGKSSDISMTEFQLQPSQPQPQPQPQPQPQPQPQPQPQPQAQPQPQQSDNFFIDLDEFQDLNIDLDQWELNIQKKEIFSNKFNLGGDDSPINGLVDDTPAGFSDLQLQLHPVFEPNSDSYQDPFEDSSMQLGSDHVQYYPMSDSDQTETTSESQLMTKEDLQDIDINDYLESCSEKTKGNSANDSAANMGSSSHQMNTAFQPLTTEDIQGTDINEVLKSFSEETNGNNNGSAANTMVPENGAVQIRPEDGNRPLLQGTECNSYNTLPSNELVYHSEGEECLDDLFGGFC 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02365 617 CDD AP2 188 247 IPR001471 GO:0003700|GO:0006355
Bva13g02365 617 Gene3D AP2/ERF domain 96 153 IPR036955 GO:0003700|GO:0006355
Bva13g02365 617 Gene3D AP2/ERF domain 187 247 IPR036955 GO:0003700|GO:0006355
Bva13g02365 617 Pfam AP2 domain 188 237 IPR001471 GO:0003700|GO:0006355
Bva13g02365 617 MobiDBLite consensus disorder prediction 346 370 - -
Bva13g02365 617 SUPERFAMILY DNA-binding domain 95 152 IPR016177 GO:0003677
Bva13g02365 617 ProSiteProfiles AP2/ERF domain profile. 187 245 IPR001471 GO:0003700|GO:0006355
Bva13g02365 617 SMART rav1_2 187 251 IPR001471 GO:0003700|GO:0006355
Bva13g02365 617 SMART rav1_2 96 157 IPR001471 GO:0003700|GO:0006355
Bva13g02365 617 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 46 281 - -
Bva13g02365 617 MobiDBLite consensus disorder prediction 502 522 - -
Bva13g02365 617 MobiDBLite consensus disorder prediction 339 375 - -
Bva13g02365 617 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM ISOFORM X1 46 281 - -
Bva13g02365 617 SUPERFAMILY DNA-binding domain 186 246 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02365 Bva-Chr13 17948800 17952829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02365 64 271 AP2-EREBP Transcription Factor Family AT1G51190 41.364 5.23e-47 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva13g02365 AP2 4.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02365 K09285 - jre:108986079 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02365 13 17948800 17952829 Bva13g02365 13 17948800 17952829 ECH