Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02360 ATGGAGCAAACTACAGGAGGCTTGCTTGGATCCAGTCTCCCAGTTCGCCAGCAAGACGAGACAGCACTTGAATCCATTCAATTTAACGAGGAAATCCATGGGATCATAGCGCCAGCCCCGGAAAACGCGAGCTCCTTCACTGCGCTTCTCGAACTCCCACCAACTCAAGCCATGGAGCTCCTTCACTCGCCGGACTGCGAGGGAACCGCCGCGGCGGCCAGTGCCTCTGCCAAATCCATATGCCAAGTCAACGATCAGAAACCCTATCTTTTTCACCCTTTTAATGGCAATTTAACCTTTCCTTCCAACACTGCTTTGATCGAACGCGCCGCTAAGTTCTCTGTCTTTGCCGGTGAGAACTCGACAACCGAGGAGGCAAGTTCGGTTTTCCCCAACTCCGGTGCGAATTTGGAAAAAGTGAAGAATGAGCCCCCAGAAACTGATTCGAATCCAAGCTCAACACAGGGTCTAGTTTCTGATACTGTGGTTGAAAACAAGAACCAGAGGGCTACTAAGAGAAGGGAACGAGAGAAGAAGGTTAAAGGGTCATCGAAGAAGAGTAAGAGCGTCGCCGACGAGACCTCCGGAGATGCTGAGAAGCTTCCCTACGTTCATGTTCGAGTACCTCGAGGTCAAGCTACAGATAGCCATAGCTTAGCAGAAAGGgCTAGGAGAGAGAAGATAAATGCTCGTATGAAGCTTTTACAAGAACTGGTCCCCGGCTGCAATAAGATATCAGGAACCGCATTGGTGCTGGATGAAATCATCAACCATGTGCAATCTCTACAACGTCAAGTGGAGTTCTTATCGATGAAACTGGCAGCAGTTAATCCTAGAATTGATTTCAGCCTTGATAGCATATTGGCTACAGAAGGTCCATCTTTAATGGACAGTAATTTCCCCAGCATGGTTACGCCTCTAATGTGGCCAGATATGTCAGACAATGGAAGCAGACAACAATATCAACAACAATGGCAATATGAAGCTTTCCACCAACCACTTTGGGGAAGGGAGGAAGACAACCACAATTTCATGACTTCAGAAAACTCACGTTTGAGTTATGATTCATCGGCAAATTCAGCTTCTCTGCACTCAAATCAGATGAAGATGGAGCTCTG 1118 0.4758 MEQTTGGLLGSSLPVRQQDETALESIQFNEEIHGIIAPAPENASSFTALLELPPTQAMELLHSPDCEGTAAAASASAKSICQVNDQKPYLFHPFNGNLTFPSNTALIERAAKFSVFAGENSTTEEASSVFPNSGANLEKVKNEPPETDSNPSSTQGLVSDTVVENKNQRATKRREREKKVKGSSKKSKSVADETSGDAEKLPYVHVRVPRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFSLDSILATEGPSLMDSNFPSMVTPLMWPDMSDNGSRQQYQQQWQYEAFHQPLWGREEDNHNFMTSENSRLSYDSSANSASLHSNQMKMEL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02360 372 Coils Coil 252 272 - -
Bva13g02360 372 Gene3D - 210 281 IPR036638 GO:0046983
Bva13g02360 372 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 20 372 - -
Bva13g02360 372 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 372 IPR024097 GO:0006355
Bva13g02360 372 MobiDBLite consensus disorder prediction 122 202 - -
Bva13g02360 372 MobiDBLite consensus disorder prediction 182 202 - -
Bva13g02360 372 CDD bHLH_AtBPE_like 202 287 - -
Bva13g02360 372 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
Bva13g02360 372 MobiDBLite consensus disorder prediction 146 165 - -
Bva13g02360 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
Bva13g02360 372 SMART finulus 218 268 IPR011598 GO:0046983
Bva13g02360 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 281 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02360 Bva-Chr13 17925164 17930051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02360 5 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.632 1.50e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva13g02360 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02360 - - gmx:100814124 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02217 04 21205409 21209729 Bva13g02360 13 17925164 17930051 BWGD
Bva13g02360 13 17925164 17930051 Bva13g02360 13 17925164 17930051 ECH