Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02355 ATGGATTCAAATTCCCACCAGAATCATCAGCACCGACAACCCAGTTCTGGGTTACTTCGGTTTCGCTCTGCCCCAAATTCAGTTCTCACAAATTTCATAGAAGCCCTTGATAAGGGTAATCCATGGGAGAACTCTGAATCGGAgagattaatttctaaattcgTAAATTACAGCGATAACAGCAATACGACGTCACCGAGTTTCCGGGAATTGGAGGATAAACCTTCAACGTCACGGAACGAAGCTTCTCTGAACCTTATGAACACTGGAGCTCAGCAAGCCTATTATGGGTTGCCTCCTCATTATCCAAGGCACAATTCTACCTCGAGTTCCCCCTTGGATAGCTCCTTTGGACTCGGCGTTTCAGTGGGAATGGATCATGAAACGCAGTCCAAAAGCTTTGGTTCGCATCTTCTCAGGCAAAGTGGCTCCCCTGCCGGTCTTTTCTCCAACATTTCCTTTCAAAATGGGTATGGCACTATGAAAGGCGTTGGAAACTATGGTGGGGTGAATGGCAATAATTGTGAACTTAGTCCTTCTATTAACAGATTGAAAAACCAGATTAGCCTCCCATCAAGAACTTCTTCCCTGGGAATTCTGTCACAGATCTCTGAATTAGAGAGTGAGAGCATTGGGCCAACTAGCCCTGATGATGGGAGGCTGGCTGCTACAAATGGTTATGTCTCTGGATTCTCATATTCTTCCTGGAATGATACATCTCGTCTCTCAGAAAATATCAGTGGCTTGAAACGAGACCAAAATAACAGTGACAAGCTATTTTCGAATGCTcagAATGGAGAGCTGGGAAATCGGGTTCATGTATTGTCGCATCGCTTGAGTTTGCCAAAGACTTCGGCAGATATGGTTGCCATGGAGAAGTTCCTCCAATTCCCTGATACTGTTCCTTGTAAAATCAGAGCAAAGCGGGGATGTGCTACGCATCCTCGAAGTATTGCAGAAAGGGTAAGAAGATCTCGGATCAGTGAACGAATGAGAAAACTACAACAACTTGTCCCAAACATGGACAAGCAAACAAACACAGCAGATATGTTGGACTTTGCTGTTGAGTACATCAAAGATCTCCAGAAACAATTCAAGACTCTGAGTGACAAACGATCAAACTGTAAATGCATGCGCATGCAGCAGCCGGATAACAAAGCAAATTTTTG 1169 0.4371 MDSNSHQNHQHRQPSSGLLRFRSAPNSVLTNFIEALDKGNPWENSESERLISKFVNYSDNSNTTSPSFRELEDKPSTSRNEASLNLMNTGAQQAYYGLPPHYPRHNSTSSSPLDSSFGLGVSVGMDHETQSKSFGSHLLRQSGSPAGLFSNISFQNGYGTMKGVGNYGGVNGNNCELSPSINRLKNQISLPSRTSSLGILSQISELESESIGPTSPDDGRLAATNGYVSGFSYSSWNDTSRLSENISGLKRDQNNSDKLFSNAQNGELGNRVHVLSHRLSLPKTSADMVAMEKFLQFPDTVPCKIRAKRGCATHPRSIAERVRRSRISERMRKLQQLVPNMDKQTNTADMLDFAVEYIKDLQKQFKTLSDKRSNCKCMRMQQPDNKANF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02355 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 378 IPR036638 GO:0046983
Bva13g02355 389 Pfam Helix-loop-helix DNA-binding domain 316 362 IPR011598 GO:0046983
Bva13g02355 389 MobiDBLite consensus disorder prediction 1 21 - -
Bva13g02355 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 361 IPR011598 GO:0046983
Bva13g02355 389 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 381 - -
Bva13g02355 389 SMART finulus 317 367 IPR011598 GO:0046983
Bva13g02355 389 Gene3D - 312 385 IPR036638 GO:0046983
Bva13g02355 389 PANTHER TRANSCRIPTION FACTOR BHLH130 10 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02355 Bva-Chr13 17900852 17903192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02355 1 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 49.340 1.33e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva13g02355 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02355 - - jre:109020257 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02222 04 21230932 21233798 Bva13g02355 13 17900852 17903192 BWGD
Bva13g02355 13 17900852 17903192 Bva13g02355 13 17900852 17903192 ECH
Bva13g02355 13 17900852 17903192 Bva09g00066 09 307848 311021 ECH
Bva13g02355 13 17900852 17903192 Bva07g02568 07 20357037 20360210 ECH