Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02336 ATGGGTTCAAGCTCTATGACCAAATCAGGAGCTTCTTCCTCCTCGCCGCCCGACCCCTCCACGGAGTCCCTCAATGGGTTGAAGTTCGGGCAGAAAATCTACTTTGAGGATGTGGGTATCGGAGCTCCGACCAAATCCAGTGGCGGGGCTTCCTCGTCCTCTGGGGCAACCCCGACAAAGAAGGGAAGGGGAGGCGCCGTACACGGCACTCAGCCTCCTAGGTGTCAGGTTGAGGGCTGTAAAGTAGATCTGTCTGACGCTAAGGCTTACTATTCCAGGCATAAAGTCTGTAGCATGCACTCAAAATCTTCTAGGGTGATAGTCGCCGGTCTGGAGCAAAGGTTTTGCCAGCAGTGTAGCAGATTTCATTTGCTTCCCGAATTTGATCAAGGAAAACGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAACGTCGGAGAAAGCCTCCTCCAAACTCCTTATTGGCCTCTAACTATGGCCGACTATCTTCCTCTGTTTTCGAAAACAGCGGCAGAGGTGGTAGCTTTCTAATGGAATTTGCTTCGTACCCAAAGTTTAATACGAGGAATACATTGCCAGCTCCGAGGTCATCTGTGCAAATTCCTGGAAATCATAGCACTACACTTTCCTGGCAGGGCAACTTGGAGACGCCATCTGACATTTTCATGCAAGGTTCAGTGGGTGGCACGGGCTTCGCTGGTCCCAGGAATCCTCCAGGAGAAAGCTTTACAGGAACCAGAGACTCAATTTGTGCTCTCTCTCTTCTGTCAAATGAAACATGGGGCCCCAGAAACCGAGCACCAAATCTTGGGGAGAACAACTTCATAAATGTCTCCGGGACACCCATGACTCAACTTGCTGCATCTCCTCAGGGCAGCTCCATCCATCAATTTCCAAGTGCCTCGTGGGGTTTCAAGGGTTTTGATGCTAGTGATTGCCCAGTCGAGGTAGTCCCCCATCTGGGTCTGGGTCAAATTTCACAGCCACCAACTAGTCAATTTCATGGTGAGCTTGACCTGTCACAACAGGGTAGGAGGCATTATATGGAATTAGAGCAGTCCAAGGCGTATGACTCTTCTCAGCATATGCACTGGTCACTTTA 1103 0.505 MGSSSMTKSGASSSSPPDPSTESLNGLKFGQKIYFEDVGIGAPTKSSGGASSSSGATPTKKGRGGAVHGTQPPRCQVEGCKVDLSDAKAYYSRHKVCSMHSKSSRVIVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKPPPNSLLASNYGRLSSSVFENSGRGGSFLMEFASYPKFNTRNTLPAPRSSVQIPGNHSTTLSWQGNLETPSDIFMQGSVGGTGFAGPRNPPGESFTGTRDSICALSLLSNETWGPRNRAPNLGENNFINVSGTPMTQLAASPQGSSIHQFPSASWGFKGFDASDCPVEVVPHLGLGQISQPPTSQFHGELDLSQQGRRHYMELEQSKAYDSSQHMHWSL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02336 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 1 367 - -
Bva13g02336 367 SUPERFAMILY SBT domain 73 154 IPR036893 GO:0003677|GO:0005634
Bva13g02336 367 MobiDBLite consensus disorder prediction 1 26 - -
Bva13g02336 367 MobiDBLite consensus disorder prediction 45 59 - -
Bva13g02336 367 MobiDBLite consensus disorder prediction 43 73 - -
Bva13g02336 367 Pfam SBP domain 75 148 IPR004333 GO:0003677
Bva13g02336 367 Gene3D - 65 136 IPR036893 GO:0003677|GO:0005634
Bva13g02336 367 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Bva13g02336 367 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 367 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02336 Bva-Chr13 17800057 17803840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02336 27 367 SBP-box Gene Family AT2G42200 48.087 3.11e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva13g02336 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02336 - - gmx:100807165 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02236 04 21305820 21310281 Bva13g02336 13 17800057 17803840 BWGD
Bva13g02336 13 17800057 17803840 Bva13g02336 13 17800057 17803840 ECH