Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02333 ATGTATGCATCTCAATGGAGATTCGTGAAAGAGCTTAGCAGCGTTGCCAATGTTAGGGGATCATCAGAAGAGTTTAGTAGTTTTCAGGCCACGAAAGCACCCTGCAGTGTTCTGACTCATCTGCAAACATCACCTGCCTTTTCTTCAACCAAAACCCTCTTGACTTTTGAACCAAGCGAACAtcagattaaaaatattcctGGTTTTTCCTCTGAGTTTCAGAAGAAAATAGATCCAGAAATTGTATTTTGTCAATCTCACGGGgataatttcatcaataacaCACAATTAGATGAATCTTTTTGGTCTAGCTACGATGACAGCTTTAACCATGTTCAGTTTCAGGGTCACAATATGCCATTTTACGAGCATTTTTCAGAAGATAGTAAGTTGCCGGAGGAGAACGATACCACTGCTACCATAGTTGGGAGCTGGCTACCAGCTTCTATTTCTTCTCAAAGAAATCGGGACAATCATGACAAACATTCTTCTGGACCATCTGGGGCTGGTGGTATTTCTTCTAGTTCCAGCAACTACGTCTCTAGGACAGTATCAAAAGGGAAAAGGAGAATAAGATGGACCAAAGATCTTCATGAGCTATTTATTACGATTGTCGATCGACTTGGTGGTCCTCAAAaggcaAAGCCTAAGGAAATACTGAAGATGATGGGTTCAGATGAACTGAGCATATCTCACATTAAAAGTCACTTGCAGAACTACCGATCTACAATACACATGCAGAAAGCTCTGCAGGAAGGACATGTGGACAAGCACAGAAGAGACGGCATAACTGAGCTTCAACTCAAAATCCAAATGCAAATAGAGGAGTCACGGCAGCTGCAACTGGAGGTGGAGAGGAGTCTCAAGGAACAATTAGAGATGCAACGAAATATGCAAGTGCTCATTGAACAACAGAAGAAGCAGCTCTTTATAATAACTTGGAGGACGACGACTGGACACGATCAAAACCAGAAAGCAAAGGAGAATCCAACACCAATGGAGgatttgaaaaagagaaagctaGACGAGGCAGGCAACGGTGACTTTTCTTCGAAGGAAGAGCTTCGCTTGCTTCTTGACCCGCTAACAAAGCCCCAGCTCGTCGATCTTCTCGCAAAATTAGGGTCCAAATATCCTTCAATtgcagaagaaataaaaagtattgcAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCATGGAATACCACTTCAGAAACATTGTGTGCTGTATTTCAAGAACATGGAGAGATTGAGGAAGGTGCTGTGATCTATGATAAAGCAACAGGAAGGTCTCGTGGGTATGGTTTCATCACTTACAAGCATATGGAATCAACTCACCGTGCATTGAGAGCACCTGGCAAGTTAATTGATGGCAGAATGGCTGTCTGTAATCTAGCTTGTGAGGGCCTAACTGGTGCAAGTAATGCGGCCGATCTTTCCTTGAGGAAGCTGTACGTTGGAAGCTTATCCCCAGAAGTCACAAGTGAAATGCTACTCCACTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGTTCAGCTGCCTATGATAAAGATACAAATGAATCTCGCGGTTTTGGCTTTGTTACGTACAAGACAGCAGAAGCTGCAAAGAAGGCTATAGATGATCCAGAAAAGACTCTTGGGGGTAGgaatataattgtaaaatatgcTGATTCCAAGAATAAAACTGGTCAGGCACCATTAACTGGAGGAGTGACTCCAATGGCGGCTGTCCCTATGGCCCCCGGATATATGCAGCCTGGAAGATCTCATATCGGCGCTCCTCCTGTCGGCTACGCTTACCCTCAAACTGTTCCCCCATACCCTCCTGCTTCTTATCCTAGCCCTCCCACTGCCCCTGTTCCTTATTATCCAATGCAAGGGCAAGTTTCTTATCCTCCAGTTTCTGTGAAGAAGGATTCACTTGGGCCCCAACCGGCTCCTCCAGTGGGAATGAGCAACTACCCGTATTACTATCCTAAGCAATA 2003 0.4264 MYASQWRFVKELSSVANVRGSSEEFSSFQATKAPCSVLTHLQTSPAFSSTKTLLTFEPSEHQIKNIPGFSSEFQKKIDPEIVFCQSHGDNFINNTQLDESFWSSYDDSFNHVQFQGHNMPFYEHFSEDSKLPEENDTTATIVGSWLPASISSQRNRDNHDKHSSGPSGAGGISSSSSNYVSRTVSKGKRRIRWTKDLHELFITIVDRLGGPQKAKPKEILKMMGSDELSISHIKSHLQNYRSTIHMQKALQEGHVDKHRRDGITELQLKIQMQIEESRQLQLEVERSLKEQLEMQRNMQVLIEQQKKQLFIITWRTTTGHDQNQKAKENPTPMEDLKKRKLDEAGNGDFSSKEELRLLLDPLTKPQLVDLLAKLGSKYPSIAEEIKSIASADPVHRKLFVRGLAWNTTSETLCAVFQEHGEIEEGAVIYDKATGRSRGYGFITYKHMESTHRALRAPGKLIDGRMAVCNLACEGLTGASNAADLSLRKLYVGSLSPEVTSEMLLHFFGRHGEIEEGSAAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNIIVKYADSKNKTGQAPLTGGVTPMAAVPMAPGYMQPGRSHIGAPPVGYAYPQTVPPYPPASYPSPPTAPVPYYPMQGQVSYPPVSVKKDSLGPQPAPPVGMSNYPYYYPKQ 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02333 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 487 564 IPR000504 GO:0003723
Bva13g02333 667 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 396 473 IPR000504 GO:0003723
Bva13g02333 667 MobiDBLite consensus disorder prediction 639 667 - -
Bva13g02333 667 SMART rrm1_1 488 560 IPR000504 GO:0003723
Bva13g02333 667 SMART rrm1_1 397 469 IPR000504 GO:0003723
Bva13g02333 667 SUPERFAMILY RNA-binding domain, RBD 482 570 IPR035979 GO:0003676
Bva13g02333 667 Coils Coil 263 283 - -
Bva13g02333 667 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 245 IPR017930 -
Bva13g02333 667 SUPERFAMILY RNA-binding domain, RBD 391 473 IPR035979 GO:0003676
Bva13g02333 667 Gene3D - 187 244 - -
Bva13g02333 667 MobiDBLite consensus disorder prediction 167 183 - -
Bva13g02333 667 SUPERFAMILY Homeodomain-like 186 243 IPR009057 -
Bva13g02333 667 MobiDBLite consensus disorder prediction 150 183 - -
Bva13g02333 667 Pfam Myb-like DNA-binding domain 192 241 IPR001005 -
Bva13g02333 667 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 188 242 IPR006447 GO:0003677
Bva13g02333 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 489 557 IPR000504 GO:0003723
Bva13g02333 667 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 398 464 IPR000504 GO:0003723
Bva13g02333 667 CDD RRM_RBM24_RBM38_like 396 471 - -
Bva13g02333 667 Gene3D - 479 579 IPR012677 -
Bva13g02333 667 Gene3D - 285 478 IPR012677 -
Bva13g02333 667 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 345 667 - -
Bva13g02333 667 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 345 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02333 Bva-Chr13 17782692 17790834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02333 172 319 G2-like Transcription Factor Family AT4G28610 41.333 1.79e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Bva13g02333 RRM_1 2.9e-14 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02333 K12741 - gmx:100776344 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02333 13 17782692 17790834 Bva13g02333 13 17782692 17790834 ECH