Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02324 ATGGATACTCGCAAGAGAGGGAGGCCTGAGTTTGGCTTCAACACTAATGGCGACCCCAAGAAGTCTAAGCAAGAAATGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCCTTTGGTGAGAGCTGCCACTTCTTGCACTACGTACCTGGTGGTTATAATGCTGTTGCCCAGATGATGAATCTAGCCCCTACCGTTCCTCCAGCATCTAGAAATATTGCTGCTCCACCACCAGTTCCTAATGGTTCCGCGTCATCTACTGTAAAAACCCGCATGTGTAAGAAGTATAATAGTGGTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCACATGGTGAATGGGAACTTGGCAAGCCTAGTGCTCCATCAGTTGATGATCATCGTTCCATGGGAGCTGGACCTATTTCTGGCCGTATACCCGGTCGAATGGAGCATCCTCCTGGTCCTGTTGGTAGTTTTGGTGCCAATGCCACTGCCAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCAATCATTGGGAAGGGTGGGGTGAACTCCAAGCAGATCTGTCGCCAAACAGGAGCTAAACTATCAATACGGGAGCATGAATCGGATCCAAATCTTAGAAACATTGAACTCGAGGGAACTTTTGAACAGATTAAGGAAGCGAGTAACATGGTACAAGAATTAATTTCAACTGTGTCAATGTCCGGCAAGACTAAATCACCCGGAGTTCCTGGTCCCCCAGCCTCTCGTGGAAGCAACTATAAGACCAAACTATGTGAGAATTTTGCGAAAGGATCATGCACCTTCGGAGAAAGATGTCACTTCGCACACGGGGCTGCTGAATTGCGAAAATCAGGAGTATG 887 0.4758 MDTRKRGRPEFGFNTNGDPKKSKQEMDSLSTGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAQMMNLAPTVPPASRNIAAPPPVPNGSASSTVKTRMCKKYNSGEGCKFGDKCHFAHGEWELGKPSAPSVDDHRSMGAGPISGRIPGRMEHPPGPVGSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASNMVQELISTVSMSGKTKSPGVPGPPASRGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRKSGV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02324 295 Gene3D K Homology domain, type 1 166 260 IPR036612 GO:0003723
Bva13g02324 295 SUPERFAMILY CCCH zinc finger 260 291 IPR036855 GO:0046872
Bva13g02324 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Bva13g02324 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Bva13g02324 295 SUPERFAMILY CCCH zinc finger 99 130 IPR036855 GO:0046872
Bva13g02324 295 Gene3D - 94 131 - -
Bva13g02324 295 Gene3D - 261 293 - -
Bva13g02324 295 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Bva13g02324 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Bva13g02324 295 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Bva13g02324 295 Pfam KH domain 172 235 IPR004088 GO:0003723
Bva13g02324 295 ProSiteProfiles Type-1 KH domain profile. 169 233 - -
Bva13g02324 295 SMART kh_6 168 238 IPR004087 GO:0003676
Bva13g02324 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Bva13g02324 295 CDD KH-I 171 234 - -
Bva13g02324 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Bva13g02324 295 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Bva13g02324 295 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 294 - -
Bva13g02324 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 159 240 IPR036612 GO:0003723
Bva13g02324 295 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Bva13g02324 295 MobiDBLite consensus disorder prediction 1 34 - -
Bva13g02324 295 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 294 - -
Bva13g02324 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02324 Bva-Chr13 17733432 17737352 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva13g02324 KH_1 1.9e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02324 - - gmx:100803981 503.442