Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02306 ATGGAGGAAGCGACATCGGATGCAATGAACCTTGATTTGAATCTTGGTCCTGGTCCAGAGCCAGCAGCTAGCTCCATAACCAATGAACCTGTGAGCTTGGATGATTGGATTGGTGAGCCTCTTCATAGAATTAGCGAATCTGTTAGGCTTAGGGCTCGACAAAGGTGGAGATGGCGGCATATCCCACCTGAAGGCCGAAACATCTCAATggatttaaatcaatttttggtCAACCCTGGTAATGGAGATGCATTACAGGTTGGTGAAGGTAGTGTGGCGGCTGAGCAAAGAACAGAGGAAATGCCTAAAGCATGTGAAAATAACAATGGTGTTACAGAAGAGGAGACATCAGAGAAGAAAGATGATGTTGAAAAGGGTAGTGGCAACGATGGGAGCTTTTTTGATTGTAATATTTGTTTAGATCTGGCCAGGGATCCTGTTGTCACTTGTTGCGGTCATTTGTTTTGTTGGCCATGCCTCTATCGATGGCTACATGTGCATTCTGATGCTAAGGAATGTCCAGTCTGCAAGGGAGAGGTgacaattaaaaatgttacCCCAATATATGGTCGGGGAAATAATGCCCCTGATCCAGAGGAAGATCCCACTCTTAAAATCCCTCTTAGGCCTAATGCAAGGCGTGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTACCTGTGGAGGAGATGATTCGCCGCATTGGAAGTAGAATTGATCTTACTAGGGATTTAGTTCAGCCCCATGAGACTGACCATGCACGTGAAACAGCAGAGAGAACTAGTTCCTTGCTGAGTAGGTTTTTGACATCTCGAGGAATGAGGAGAGAGCATAATCCTGGGCCATCCCCAGATGATGTAATGGATTTAACACAAAACGTTGCTAGCACTGAAGTAGGAGATATCCGCAGGTTTCAGCATTCTAGGTTCCGAAGAGGACATTTACATAGAGcaacattttcttctctttcaacaGCGCTGAATAACGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCCATCCTATTGGTAGAAGCCAGGAACAACCTCCACCAGTTGATGACAGAGATTCCTTTTCAAGCATTGCTGCTGTCATAAATTCAGAGAGTCAAGTGGACAATGCTATAGAAATTGATTCCATGGTGTCCTCTTTGTCAACATCCTCTTCCAGGAGGAGAAATGACCCTTCAAGAGCTTCTGATGTGGATACTGGAGATTCTCGTGCCCCAAGGCGGAGGCGGTTGAACTG 1253 0.4374 MEEATSDAMNLDLNLGPGPEPAASSITNEPVSLDDWIGEPLHRISESVRLRARQRWRWRHIPPEGRNISMDLNQFLVNPGNGDALQVGEGSVAAEQRTEEMPKACENNNGVTEEETSEKKDDVEKGSGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTIKNVTPIYGRGNNAPDPEEDPTLKIPLRPNARRVESLRQTIQRNALPVEEMIRRIGSRIDLTRDLVQPHETDHARETAERTSSLLSRFLTSRGMRREHNPGPSPDDVMDLTQNVASTEVGDIRRFQHSRFRRGHLHRATFSSLSTALNNAERLVEAYFRSHPIGRSQEQPPPVDDRDSFSSIAAVINSESQVDNAIEIDSMVSSLSTSSSRRRNDPSRASDVDTGDSRAPRRRRLN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02306 417 MobiDBLite consensus disorder prediction 112 126 - -
Bva13g02306 417 MobiDBLite consensus disorder prediction 395 417 - -
Bva13g02306 417 PANTHER OS01G0830200 PROTEIN 13 417 - -
Bva13g02306 417 CDD RING-HC_AtRMA_like 134 178 - -
Bva13g02306 417 Pfam Zinc finger, C3HC4 type (RING finger) 136 176 - -
Bva13g02306 417 SMART ring_2 136 176 IPR001841 -
Bva13g02306 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 417 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bva13g02306 417 MobiDBLite consensus disorder prediction 384 417 - -
Bva13g02306 417 ProSiteProfiles Zinc finger RING-type profile. 136 177 IPR001841 -
Bva13g02306 417 SUPERFAMILY RING/U-box 132 189 - -
Bva13g02306 417 ProSitePatterns Zinc finger RING-type signature. 151 160 IPR017907 -
Bva13g02306 417 MobiDBLite consensus disorder prediction 96 126 - -
Bva13g02306 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 256 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02306 Bva-Chr13 17652833 17655065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02306 1 408 C3H Transcription Factor Family AT3G58030 51.613 1.02e-127 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02306 K10666 - gmx:100811099 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02306 13 17652833 17655065 Bva13g02306 13 17652833 17655065 ECH