Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02305 ATGGAGCTAGCATTGAGCTTAGGAGATGCTTCAAAaccattctcttttcttgacAAGCCAGCAAAAATGCCTAACAAAGATCCTCATCCCGGCTTCTGCATAGCGCTAGGGGGTGCTTTTGCCACCGGAAAGGCCTCCGAAGATAAAAGAGTGAATCGAGGCCCAGATGAGACCGGGGCTTCTTCTTCAGATCCACCCCTTCAGCTCGACCTTCTTCCCTTTACTCCTGTTCCTCGAACCAACCCACCTTCTCGACTTCGGATTCCTTGGCTTTCTGATGCATTGGGTATTGAGCGCGTTTTATCAGATCCAGGTGCGAGGGCGTTGGATGTGAACCGTTCGGCGGACGACGGCGACGATGGTGCTGCTGTGTCGTCTCCTAACAGTGCTGCGTCGTCGTTTCAAATGGATTTTTACGCTAGGAACAACGGTAATGCGGCCAGAaacaagagagagaatgagGGGGACGCCGAGAGAACGAGTTCGAGAGCGAGCGACGATGATGACAACGGTTCAACTCGGAAGAAACTCAGACTCTCCAAGGAGCAATCGGCTTTCCTCGAAGAGAGCTTCAAAGAACATGCCACTCTCAATCCCAAGCAAAAACTTGCTCTTGCAAAGCAGTTAAATCTTCGTCCTCGTCAAGTAGAAGTTTGGTTTCAGAACAGAAGGGCaaggACTAAGTTGAAGCAGACGGAGGTAGATTGTGAATATTTAAAGCGATGCTGCGATACTCTGACGGAAGAGAATAAGAGGTTACAGAAGGAACTGCAAGAACTAAGAGCTTTAAAAGCTTCCCAACCATTTTACATGCAGCTGCCAGCTACTACTCTCACCATGTGTCCCTCTTGCGAACGCGTCGCCACCAACTCTTCCTCCGGGACCGCTGGCGCCGCCAATCAAACCACCACCAACGGTTCTCTAATCCCACCACCGTTGTCGCTTAGCAACTCCAGAGCACCGCCTTTCACAAATGCCCAAACCCACACGCAGCAGGCGAAACCTCATGATTA 1013 0.4896 MELALSLGDASKPFSFLDKPAKMPNKDPHPGFCIALGGAFATGKASEDKRVNRGPDETGASSSDPPLQLDLLPFTPVPRTNPPSRLRIPWLSDALGIERVLSDPGARALDVNRSADDGDDGAAVSSPNSAASSFQMDFYARNNGNAARNKRENEGDAERTSSRASDDDDNGSTRKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENKRLQKELQELRALKASQPFYMQLPATTLTMCPSCERVATNSSSGTAGAANQTTTNGSLIPPPLSLSNSRAPPFTNAQTHTQQAKPHD 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02305 337 CDD homeodomain 174 231 IPR001356 GO:0003677
Bva13g02305 337 MobiDBLite consensus disorder prediction 147 177 - -
Bva13g02305 337 ProSitePatterns 'Homeobox' domain signature. 205 228 IPR017970 GO:0000981|GO:0006355
Bva13g02305 337 Pfam Homeobox associated leucine zipper 230 264 IPR003106 GO:0006355|GO:0043565
Bva13g02305 337 PANTHER - 2 316 - -
Bva13g02305 337 ProSiteProfiles 'Homeobox' domain profile. 170 230 IPR001356 GO:0003677
Bva13g02305 337 SUPERFAMILY Homeodomain-like 165 231 IPR009057 -
Bva13g02305 337 MobiDBLite consensus disorder prediction 289 337 - -
Bva13g02305 337 Pfam Homeodomain 174 228 IPR001356 GO:0003677
Bva13g02305 337 SMART HOX_1 172 234 IPR001356 GO:0003677
Bva13g02305 337 MobiDBLite consensus disorder prediction 111 130 - -
Bva13g02305 337 Coils Coil 236 266 - -
Bva13g02305 337 MobiDBLite consensus disorder prediction 143 177 - -
Bva13g02305 337 SMART halz 230 273 IPR003106 GO:0006355|GO:0043565
Bva13g02305 337 MobiDBLite consensus disorder prediction 1 22 - -
Bva13g02305 337 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 316 - -
Bva13g02305 337 CDD bZIP 223 262 - -
Bva13g02305 337 MobiDBLite consensus disorder prediction 43 87 - -
Bva13g02305 337 Gene3D - 178 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02305 Bva-Chr13 17641592 17643251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02305 64 289 Homeobox Transcription Factor Family AT2G44910 51.711 9.88e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva13g02305 Homeodomain 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02305 K09338 - qsu:112028347 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02264 04 21456343 21457852 Bva13g02305 13 17641592 17643251 BWGD
Bva13g02305 13 17641592 17643251 Bva13g02305 13 17641592 17643251 ECH