Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva13g02302 | ATGGCTCCTGGAGGCAGTGCTTGCAAAGAAGTTCTTGAGTCTCACCTTATATTTTCAGATTATGACACAGCCAAGTCCAAATCTGAGGCTAAtagtaatattaatattacaaaatctAGCCCTGTGTCGGGTGGAAAACATGGAACTAATTCAAAGAATGGCGTGAATGACTTGCTCGAGTGCCCTATTTGCAATAATTTGATGTATCCTCCAATTCACCAGTGCCCAAATGGCCACACGTTATGTTCAGACTGTAAGGTCAGAGTGCATAACTCTTGTCCAACTTGTCGCTATGATCTTGGAAATATAAGGTGTTTGGCTCTGGAGAAAGTAGCGGAATCATTAGAACTTCCCTGCAGATATCAGAATCTAGGTTGTCATGATATATTTCCATACTACACCAAGCTTAAACACGAGCAAAACTGTCGATTTCGGCCATACAATTGCCCCTATGCCGGATCTGAGTGCTCTGTGATGGGTGACATTCCAACTCTTGTTACCCATCTTAAGGAGGATCACAAGGTTGACATGCACGAGGGGTGCACCTTTAACCATCGATATGTGAAATCAAATCCACATGAAGTTGAAAACGCCACATGGATGCTAACTGTTTTCAATTGTTTTGGAAGGCATTTCTGCTTACACTTTGAGGCTTTCCAGCTTGGGTTGGCTCCTGTATATATGGCGTTTCTACGATTTATGGGTGATGACAGTGAGGCAAAGAAATTTACCTACAGCTTGGAAGTTGGTGCAAATGGCCGGAAACTTATATGGCAAGGAATTCCAAGAAGCATTCGTGACACTCATCGGAAAGTTCGTGACAGTCAAGATGGACTTATCATTCAGAGGAATCTAGCCCTTTACTTTTCTGGTGGGGATGCACAGGAGTTGAAGTTAAGGATTACTGGTCGTATATGGAAAGAAGATTG | 929 | 0.4209 | MAPGGSACKEVLESHLIFSDYDTAKSKSEANSNINITKSSPVSGGKHGTNSKNGVNDLLECPICNNLMYPPIHQCPNGHTLCSDCKVRVHNSCPTCRYDLGNIRCLALEKVAESLELPCRYQNLGCHDIFPYYTKLKHEQNCRFRPYNCPYAGSECSVMGDIPTLVTHLKEDHKVDMHEGCTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFQLGLAPVYMAFLRFMGDDSEAKKFTYSLEVGANGRKLIWQGIPRSIRDTHRKVRDSQDGLIIQRNLALYFSGGDAQELKLRITGRIWKED | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva13g02302 | 309 | Pfam | Seven in absentia protein family | 103 | 302 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Bva13g02302 | 309 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 167 | IPR013083 | - | |
| Bva13g02302 | 309 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 113 | IPR013083 | - | |
| Bva13g02302 | 309 | CDD | Sina | 175 | 303 | - | - | |
| Bva13g02302 | 309 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 168 | 302 | IPR008974 | GO:0005515 | |
| Bva13g02302 | 309 | ProSiteProfiles | Zinc finger RING-type profile. | 61 | 97 | IPR001841 | - | |
| Bva13g02302 | 309 | SUPERFAMILY | TRAF domain-like | 114 | 306 | - | - | |
| Bva13g02302 | 309 | CDD | RING-HC_SIAHs | 59 | 97 | - | - | |
| Bva13g02302 | 309 | SUPERFAMILY | RING/U-box | 54 | 100 | - | - | |
| Bva13g02302 | 309 | ProSiteProfiles | Zinc finger SIAH-type profile. | 114 | 174 | IPR013010 | GO:0008270 | |
| Bva13g02302 | 309 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 308 | - | - | |
| Bva13g02302 | 309 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE | 1 | 308 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva13g02302 | Bva-Chr13 | 17623822 | 17627640 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva13g02302 | 1 | 309 | C3H Transcription Factor Family | AT2G41980 | 80.583 | 0.0 | 525 |