Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02281 ATGAGGGGTAGAAGCTACAGCTACAGTCCTTCACCCCCAAGGGGTCATAGCAGAAGATACCGCAGCCCTAGTCCTAGAGGTCGGTATAGAGGCCGTGGTAGGGATCTTCCAACAAGTCTTTTGGTTCGGAACCTCCGCAGAGATTGCAGGGCAGAAGATCTCCGTGGACCATTTGGCCAGTTTGGTCCTCTCAAGGACATTTACCTGCCTCGAGATTATTATACTGGAGTTGAAGACACAAATGAAGTAGTTAGAATTTTCATCTCAATTAATACTTTGGCTTCCACAAGGGAACCACGAGGTTTTGGCTTTGTCCAATATGTTGTTCCGGCTGATGCTGCAGATGCTAAAGATAACATGGATGGCCAAATCCTACTTGGTCGTGAGTTGACTGTGGTGTTTGCTGAAGAGAACAGAAAGAAGCCTGCAGAAATGAGGGCAAGAGAGCGTACTAGGAGTGGGTCTTATGATCATAGGCGGTATGCACAAACTTATTCTCGCAGTCCAGAGTATTCTCCTTCTCCAAGGCGAAGGCACTATTCAAGGTCAATCTCACCAAGATTCGGGAGGTATAGAGAGCGTTCATACTCGAGATCACCTTATGGATCAAGAAGCCGCAGTCAAAGCAGGAGCTGGAGCTACTCGAGGATGGTTAGAGGACATAATCCATGGTGGAATATGCACTA 686 0.4738 MRGRSYSYSPSPPRGHSRRYRSPSPRGRYRGRGRDLPTSLLVRNLRRDCRAEDLRGPFGQFGPLKDIYLPRDYYTGEPRGFGFVQYVVPADAADAKDNMDGQILLGRELTVVFAEENRKKPAEMRARERTRSGSYDHRRYAQTYSRSPEYSPSPRRRHYSRSISPRFGRYRERSYSRSPYGSRSRSQSRSWSYSRMVRGHNPWWNMH 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02281 207 MobiDBLite consensus disorder prediction 1 35 - -
Bva13g02281 207 Gene3D - 32 147 IPR012677 -
Bva13g02281 207 SUPERFAMILY RNA-binding domain, RBD 38 141 IPR035979 GO:0003676
Bva13g02281 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Bva13g02281 207 SMART rrm1_1 39 112 IPR000504 GO:0003723
Bva13g02281 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Bva13g02281 207 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 202 - -
Bva13g02281 207 MobiDBLite consensus disorder prediction 118 136 - -
Bva13g02281 207 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 202 - -
Bva13g02281 207 MobiDBLite consensus disorder prediction 118 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02281 Bva-Chr13 17496768 17498774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02281 38 182 Eukaryotic Initiation Factors Gene Family AT4G34110 26.712 4.67e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02281 K12900 - jre:108985117 214.927