Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02273 ATGAGtattatatttgttgtttGGGTGCGGAAGGAGGTCGGCGAGATCGTTAAGTCTCGGATGGAATCTCAGGTGAAGCATGCTGTGGTTATCAAGGTTATGGGCCGTACTGGATCCAGAGGGCAGGTCACTCAGGTCAGGGTCAAGTTCCTGGATGATCAAAACCGTTATATCATGAGGAATGTGAAAGGACCAGTGAGAGAAGGCGACATCCTCACCCTTCTTGAGTCTGAAAGAGAAGCAAGGAGATTGCGTTa 257 0.4708 MSIIFVVWVRKEVGEIVKSRMESQVKHAVVIKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02273 85 Pfam Ribosomal protein S28e 24 84 IPR000289 GO:0003735|GO:0005840|GO:0006412
Bva13g02273 85 PANTHER 40S RIBOSOMAL PROTEIN S28 21 85 IPR000289 GO:0003735|GO:0005840|GO:0006412
Bva13g02273 85 Gene3D - 18 85 IPR012340 -
Bva13g02273 85 SUPERFAMILY Nucleic acid-binding proteins 21 85 IPR012340 -
Bva13g02273 85 Hamap 30S ribosomal protein S28e [rps28e]. 21 85 IPR000289 GO:0003735|GO:0005840|GO:0006412
Bva13g02273 85 CDD S1_S28E 26 85 IPR000289 GO:0003735|GO:0005840|GO:0006412
Bva13g02273 85 ProSitePatterns Ribosomal protein S28e signature. 76 84 IPR028626 -
Bva13g02273 85 PANTHER 40S RIBOSOMAL PROTEIN S28 21 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02273 Bva-Chr13 17467911 17468730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02273 21 85 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.231 1.68e-36 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02273 K02979 - csv:101212501 102.834