Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02272 ATGGCATCGAGATTCTGGAACCAGGGTGGTGGCAGTGACTCTGAGGAGGAGGAGAGTGATTATGATGAGGAAATTGATAACGTTGATGATCCTATTAATCAAGATTCTACTAAAAACAGATACTTACAGACAAATGATAGTGATAGTGATGATTCTGATGGCCAAAGGCGTGTTGTTAGGTCAGCAAAAGACAAGCGTTTTGAGGAGATGTCTTCTACAGTAGACCAGATGAAGAATGCGATGAAAATTAATGACTGGGTGAGCTTGCAAGAGAGCTTTGATAAGATCAACAAACAACTTGAGAAAGTCATGCGTGTAACTGAGTCTGAGAAGGTCCCCACACTTTACATTAAAGCACTTGTGATGTTGGAAAACTTCTTATCTGAGGCTTTGGCAAATAAGGAGGCCAAAAAGAAGATGAGTAGTAGCAATGCAAAAGCCTTGAACTCAATGAAGCAGAAACTTAAGAAGAACAATAAACAGTATGAGGATATGATTACTAAATATAGGGAGAATCCTGAGAGCGAGAAGGAAAAGGATGATGAGATAGAGGAGGATGAAGAAAGTGAAGCTGAAGAGATAATTGAGCCTGACGATATCAAATCAGACTCTGATGCCGATGAGCCTGAAGATGATAGAGAAGATGCACATGATGGGCCTTGGGATCAGAAGCTTAGCAAGAGGGACAGGCTTATGGACAGGCAGTTTATGAAAGACCCTAGCGAGATCACTTGGGAAATGGTAAACAAGAAGTTCAAAGAAATTGTGGCAGCTAGGGGTAGGAGGGGGACTGGAAGGTTTGAACAGGTTGAGCAGCTGACCTTCTTAACCAAAGTAGCTAAGACACCTGCACAGAAGCTGCAAATCCTTTTTAGTGTTGTTTCTGCTCAATTTGATGTTAATCCAGGTCTCAATGGGCATATGCCTATAAATGTCTGGAAGAAATGTGTACGGAATATGCTGGTCATTCTTGATATTCTGGAGGGACATAGGAACATTGTGGTTGATGATTCAGTAGAGCCAGATGAGAATGAAACTCAGAAGGGGCCAGACTATAATGGATCAATTCGTGTTTGGGGGAATTTAGTTGCTTTTCTAGAAAGGATGGATGCTGAGTTTTTTAAGAGCTTGCAATGCATAGATCCTCATACTCGTGATTATGTTGAGAGACTCAGGGATGAGCCCATCTTTTTGGTTCTTGCTCAGAATGTGCAGGAGTACCTTGCAAGTGTTGGAGATTTCAAAGCTTCTTCTAAAGTGGCCCTGAAGCGGGTTGAACTCATTTATTACAAACCACAGGAAGTTTATGATGCCATGAGAAAATTGGCTGAGCTGACCGAAAATGGAGATAGTGGAGAAGCTGAGGAGCCAAAAGGTTTTGAGGACACAAGGAATCCTGCtccatttgttgttattcCTGAGATTGTGCCCCGCAAACCTACTTTTCCAGAGAAAAGCAGGACCCTAATGGATATGTTGGTATCcctgatatataaatatgggGATGAGCGTACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGGTCTTCTTGATGAGTTCTCAACAGCTCGCGATCTGCTGCTTATGAGCCATTTGCAAGATGGCATTCAACTTATGGACATTTCATCACAGATACTTTTTAACAGGGCTGTATCGCAGCTGGGTTTGTGTGCTTTTCGGGTTGGATTGATTGCTGAAGCACATAGTTGTCTCTCTGAACTTTATTCTGGTGGAAGGGTGAAGGAGCTCCTTGCTCAGGGTGTTTCACAAAGTCGCTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGGAGACGCCAGATGCCATATCATATGCACATAAATCTTGAGCTCTTGGAGTCCGTACATCTAATATGTGCTATGCTTCTTGAAGTCCCTAACATGGCAGCCAATGTGCATGATGCGAAGCGCAAGGTCATTAGTAAGACCTTCAGGCGCTTGCTTGAGGTTAGCGAGAAGCAAACATTCACAGGCCCTCCTGAAAATGTCAGAGATCACATCATGGCTGCGACAAGGGCTCTTAGGAAGGGAGACTTCCATAAGGCGTTGGATGTAATCAAGTCCCTTGATGTATGGAAGTTTGTTAGAAATCGCGATACTGTACTAGAGATGCtaagagacaaaataaagGAGGAAGCTTTGAGGACATACCTCTTTACCTTTTCTTCATCCTATGATTCTCTGAGCCTGGAACAGCTAACCAAAATGTTTGAACTTTCTGTTGCTCACACTCATAGCATTGTTAGCAGGATGATGATCAACGAGGAGCTCCATGCAAGCTGGGACCAACCAAGTGGTTGCATTGTTTTCCAGGATGTTGAGCACTCAAGGTTACAGGCGTTAGCGTTCCAGTTGACTGAGAAATTATCCATCCTTGCTGAGAGTAATGAAAGGGCAATGGAGGCAAGAATTGGCGGCGGCGGATTGGATCTGCCTCTAAGACGTAGAGATAGCCAAGACTACGCTGCTGCCGCTGCTGGCGGTAGATGGCAAGAACTGCCCCATACTCAGACAAGACAAGGTGGTGGTGCGGGACGCACAGGATATATTGGCGGTGGAAGGCCCTTTGCGTTAGGCCAGTCAGCTGGGGGTGCAAAGGATCGAACATTTCGAGGAGCAGCTACGTATGGAGGGTCTGGGAGGAATACTCAGGGTGGTTCAGGATTGAGGGGTTCCCAGGTGGATGGATCTACTCGTATGGTTAGTCTCAAGGGAGTTCGTGCttg 2759 0.4389 MASRFWNQGGGSDSEEEESDYDEEIDNVDDPINQDSTKNRYLQTNDSDSDDSDGQRRVVRSAKDKRFEEMSSTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLENFLSEALANKEAKKKMSSSNAKALNSMKQKLKKNNKQYEDMITKYRENPESEKEKDDEIEEDEESEAEEIIEPDDIKSDSDADEPEDDREDAHDGPWDQKLSKRDRLMDRQFMKDPSEITWEMVNKKFKEIVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLNGHMPINVWKKCVRNMLVILDILEGHRNIVVDDSVEPDENETQKGPDYNGSIRVWGNLVAFLERMDAEFFKSLQCIDPHTRDYVERLRDEPIFLVLAQNVQEYLASVGDFKASSKVALKRVELIYYKPQEVYDAMRKLAELTENGDSGEAEEPKGFEDTRNPAPFVVIPEIVPRKPTFPEKSRTLMDMLVSLIYKYGDERTKARAMLCDIYHHGLLDEFSTARDLLLMSHLQDGIQLMDISSQILFNRAVSQLGLCAFRVGLIAEAHSCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLICAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHIMAATRALRKGDFHKALDVIKSLDVWKFVRNRDTVLEMLRDKIKEEALRTYLFTFSSSYDSLSLEQLTKMFELSVAHTHSIVSRMMINEELHASWDQPSGCIVFQDVEHSRLQALAFQLTEKLSILAESNERAMEARIGGGGLDLPLRRRDSQDYAAAAAGGRWQELPHTQTRQGGGAGRTGYIGGGRPFALGQSAGGAKDRTFRGAATYGGSGRNTQGGSGLRGSQVDGSTRMVSLKGVRA 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02272 919 Coils Coil 145 172 - -
Bva13g02272 919 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 715 803 - -
Bva13g02272 919 MobiDBLite consensus disorder prediction 156 177 - -
Bva13g02272 919 MobiDBLite consensus disorder prediction 44 72 - -
Bva13g02272 919 MobiDBLite consensus disorder prediction 178 215 - -
Bva13g02272 919 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 45 646 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva13g02272 919 SMART PINT_4 715 803 IPR000717 -
Bva13g02272 919 MobiDBLite consensus disorder prediction 887 910 - -
Bva13g02272 919 Pfam PCI domain 654 782 IPR000717 -
Bva13g02272 919 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 918 - -
Bva13g02272 919 MobiDBLite consensus disorder prediction 13 30 - -
Bva13g02272 919 MobiDBLite consensus disorder prediction 216 233 - -
Bva13g02272 919 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 918 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva13g02272 919 MobiDBLite consensus disorder prediction 1 73 - -
Bva13g02272 919 Gene3D - 721 790 IPR036388 -
Bva13g02272 919 MobiDBLite consensus disorder prediction 138 233 - -
Bva13g02272 919 SUPERFAMILY "Winged helix" DNA-binding domain 711 785 IPR036390 -
Bva13g02272 919 ProSiteProfiles PCI domain profile. 614 786 IPR000717 -
Bva13g02272 919 MobiDBLite consensus disorder prediction 884 919 - -
Bva13g02272 919 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 859 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02272 Bva-Chr13 17459695 17464160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02272 1 919 Eukaryotic Initiation Factors Gene Family AT3G56150 68.421 0.0 1195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02272 K03252 - gmx:100779751 1405.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02272 13 17459695 17464160 Bva13g02272 13 17459695 17464160 ECH