Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02254 ATGCTTAGCATCAAGAGATTGTTGTACCAGACCagaaagataaagaagaaaaacgcAACCAGACGCAAGTTGAGAACCCAAACTCCttgtaaaacaaaattgccTGTCCGAGAAGACGACGAGGTACTAGAAGATCCCGAAGAAGATGGTTTCAAGCTCACCTCTGCGTCATCACAGGCCTATGTCGTTCAGCCCTTGGGCAATCTCTATTTAAACCCAGGTTCTACTAACTCCAGAGACACGGGTCTAGGTAATTTTCACACCCTTACGGATGAGCTTGTTCTTGAAATTCTTGGCTTGTTGGGTGATATTGAATTGGGTGTTCTGGCAACTGTGAGCAagtctttttatgtttttgccAACTATGAGCCCCTTTGGAGGAACCTTGTATTGGAAAATTTTAGTGGTGGGTTTCGCTACAATGGGACTTGGAAATCTGCTTTTATTAGTGCTAATTACCCtgcatttaatattttaaataatggtgttcagaatttgaaaataagagaCTTCTATTCTGATTATCTCTTTCAAAGTTGGCTCTGTGCTAATCTTGAAATGAAACCGGAATGGCTGGAAAGAGATAATATAACTCGAAAGAAGGGCATTTCGGTTGAAGAATTTATATTGAACTTTGAGGAGCCTAATAAGCCAGTATTATTGGAAGGTTGCCTTGATGATTGGGCTGCTTTGAAAAATTGGGATAGAGACTATTTGCTGCAATTGTGTGGTGATGTTAAGTTTTCGGCTGGGCCAGTAGAGATGAAGCTTAAAGATTATTTTGGGTACTCGGATCAAATGAGAGAAGAGAGACCATTATACTTGTTTGATCCAAAATTTGCAGATAAAGTTCCAAAGTTAGGCTCAGAATATGAAGTTCCAGTGTACTTCCGGGAGGACTTGTTTCACGTTTTGGGAAATGAGAGACCTGACTACAGGTGGATTATCATTGGACCAGCTGGATCTGGTTCATCTTTTCATGTTGATCCAAATTCAACTTCAGCTTGGAATGCAGTTATCAAGGGATCCAAGAAGTGGATAGTATTTCCTCCTGATGTGATTCCACCTGGGGTTCACCCTAGCCCTGATGGCGCAGAGGTTGCATCTCCCGTTTCAATAATTGAGTGGTTCATGAACTTCTACGGTGCaacaaaaaattggaaaaagaaaccTGTTGAGTGTATTTGTAAAGCTGGGGAGGTTATCTTTGTACCACATGGATGGTGGCATTTGGTGATCAACCTTGAGGAGTCCATAGCCATTACCCAAAATTATGTTAGCAGGAGAAATTTGTTGAATGTCTTGGATTTTCTTAAGAGGCCAAATGCCAGGACACTGGTATCTGGAACAAGAGATCGAGTGAACTTGCATGAGAAATTCAAGAATGCTATTGAGGCTTCTTTTCCGGGAATAATTGATGAGGTGACCCTccgagaagaagagaaaaaggccCAGCAGAAAAAGCCAACCTTCTGGGATTCTGTAGCTGATTCCAAGGCAGGAGCTTTCAAGTTCTCCTTCTA 1523 0.3835 MLSIKRLLYQTRKIKKKNATRRKLRTQTPCKTKLPVREDDEVLEDPEEDGFKLTSASSQAYVVQPLGNLYLNPGSTNSRDTGLGNFHTLTDELVLEILGLLGDIELGVLATVSKSFYVFANYEPLWRNLVLENFSGGFRYNGTWKSAFISANYPAFNILNNGVQNLKIRDFYSDYLFQSWLCANLEMKPEWLERDNITRKKGISVEEFILNFEEPNKPVLLEGCLDDWAALKNWDRDYLLQLCGDVKFSAGPVEMKLKDYFGYSDQMREERPLYLFDPKFADKVPKLGSEYEVPVYFREDLFHVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWIVFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKKPVECICKAGEVIFVPHGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNARTLVSGTRDRVNLHEKFKNAIEASFPGIIDEVTLREEEKKAQQKKPTFWDSVADSKAGAFKFSF 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02254 507 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 55 505 - -
Bva13g02254 507 SUPERFAMILY Clavaminate synthase-like 196 455 - -
Bva13g02254 507 Gene3D Cupin 173 427 - -
Bva13g02254 507 SMART fbox_2 89 129 IPR001810 GO:0005515
Bva13g02254 507 Pfam Cupin-like domain 207 425 IPR041667 -
Bva13g02254 507 SMART cupin_9 273 442 IPR003347 -
Bva13g02254 507 SUPERFAMILY F-box domain 81 149 IPR036047 GO:0005515
Bva13g02254 507 ProSiteProfiles JmjC domain profile. 282 442 IPR003347 -
Bva13g02254 507 Gene3D - 78 155 - -
Bva13g02254 507 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 55 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02254 Bva-Chr13 17377789 17380588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02254 74 431 Glycosyltransferase AT1G78280 36.957 1.96e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva13g02254 Cupin_8 1.7e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02254 - - qsu:111991092 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02254 13 17377789 17380588 Bva13g02254 13 17377789 17380588 ECH