Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02245 ATGGAGGTTCCAGAAATGGAAGACAAGCACTCTGAAAGTCATATGGCATCAGCTGCTGCCTTTGTGGAAGGGGGGATCCAAGAAGCCAATGATGATGCTTGCAGCATATGCCTTGAGGATTTTTGTGATAGTGATCCTTCAGCGGCGACTAATTGCAAGCATGAGTTCCACCTGCAGTGCATTCTTGAATGgtGTCAGAGAAGCTCCGAGTGTCCTATGTGTTTGCAATCTCTTAGTTTGAAGGATCCCTCGAGTCAAGAATTGCTTGAGGCGGTAGAGCAGGAAAGGACCTTGAGAAATACTCCATCAAGAAATGCTACTATATTTCGTCATCCTGCACTGGGTGATTTTGAATTACAGCATTTACCTGTGGGTGTAAATGGGTCGGATATTGAAGAGCGGATACTTCAACATTTAGCTGCTGCAGCAGCAATGGGCAGAGCACGCCACTTGGGTCGGAGGGAAGGGCAAAGAGCTAGACCATCTGGCCACGGCCGTCCACACTTTTTAGTATTCTCAACTCAGCCTAGTGTGCCTACGTCTGATCCTATTTCGCCTGCTGAAGGTACAACTGAACCTGCTGCAATTCCTGTGGGAAGTCCATCTACTCCACTTACATCTGATGGGGATGAACCATCACAGCAGATCGCACAGAGTCATATTCGGAGCTCTTCTTTACCACCTGCCAGATCTACTTACATGCCAGCAGATCATCAAGGAGTTTACTCTAATGATCGGGGATCAACTGTTCATTCTGCACAATCAAACCAAGATAGAGCTGGACCATCAGAATTTCAGTCATTTTCTGAGTCTCTACGGTCCAGACTAAATTCAGTGTCTACGAGATACAAAGAGTCAATTTCAAAGAGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCGTAATGCTTCCATGTCAGATCTTGGTTCTGAAGTTAGGAGAGAGTTGAATGCTGGGATTGCCAGCATGGTTCCATTGTGGAGACAAGCAACCGGAACAATGCTGAAGCTCGTGGAGAAAACTCTTTGGGTAACAACAATACTCCAGCTACTTGTTCTGCTGGCACACATTCAAATTGAGATCTATTTTCTTCCTGCTAGTGCATCTTTCCTCAGCATCTCATATTTGAAGGTTAACTGTTTCTCCAGACATGACATTCTGAGGAGCAGATGCTTTGGATTACAATCCACACGGAGAGTCTTCTG 1205 0.4589 MEVPEMEDKHSESHMASAAAFVEGGIQEANDDACSICLEDFCDSDPSAATNCKHEFHLQCILEWCQRSSECPMCLQSLSLKDPSSQELLEAVEQERTLRNTPSRNATIFRHPALGDFELQHLPVGVNGSDIEERILQHLAAAAAMGRARHLGRREGQRARPSGHGRPHFLVFSTQPSVPTSDPISPAEGTTEPAAIPVGSPSTPLTSDGDEPSQQIAQSHIRSSSLPPARSTYMPADHQGVYSNDRGSTVHSAQSNQDRAGPSEFQSFSESLRSRLNSVSTRYKESISKSTRGWKERLFSRNASMSDLGSEVRRELNAGIASMVPLWRQATGTMLKLVEKTLWVTTILQLLVLLAHIQIEIYFLPASASFLSISYLKVNCFSRHDILRSRCFGLQSTRRVF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02245 401 MobiDBLite consensus disorder prediction 147 268 - -
Bva13g02245 401 MobiDBLite consensus disorder prediction 196 230 - -
Bva13g02245 401 MobiDBLite consensus disorder prediction 173 187 - -
Bva13g02245 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 83 IPR013083 -
Bva13g02245 401 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Bva13g02245 401 Pfam Ring finger domain 33 74 IPR001841 -
Bva13g02245 401 SUPERFAMILY RING/U-box 27 81 - -
Bva13g02245 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 4 322 - -
Bva13g02245 401 SMART ring_2 34 74 IPR001841 -
Bva13g02245 401 MobiDBLite consensus disorder prediction 148 162 - -
Bva13g02245 401 MobiDBLite consensus disorder prediction 242 268 - -
Bva13g02245 401 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 4 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02245 Bva-Chr13 17330147 17334092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02245 26 82 C3H Transcription Factor Family AT4G00335 42.105 1.15e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02245 K19043 - jre:109013501 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02315 04 21711405 21716484 Bva13g02245 13 17330147 17334092 BWGD
Bva13g02245 13 17330147 17334092 Bva13g02245 13 17330147 17334092 ECH