Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02222 ATGTCCGGCGGCGCTGGGGCTTCGAACCGCCAGGCGTCGCCATCGCCGGAAGCGTCGAACCTCCAGACACGGCCGCCACTGAAGCGTCATCTTGCTTTTGCATTTACGAAGCCTCCATTTGCTCCTCCAGATGATTATCACAACTTTTCCGCTGCAGACTCTAGGAGAGCTACCGATCAAGAAGCTGAAGCTATTGTTGTTAGATCTCCCTACATGAAGAGGAAGAGTGGAGTGAATGACAATGAAGGGGAGTCGCAGGAGTGGAGTAACACCCCTGGATGCTCGAATGTACTGAATAGTCCTTTCAAAACACCTGTGTCTGCAAAAGGGGGAAGGACATACAATAAATCAAAGGTTTCCAAGGAGGGCAAATCTGGTCCTCAGACACCCATTTCAAATGTTGGTTCCCCTTCTCCCCTTACTCCTGCTGGCAGCTGTCGTTATGACAGTTCTTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGCTCAAGCATGCAGAGGATGGTAATCTTGACTTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTCTTGGAAGGCATTGGTCTCATCGAGAAAAAGCTCAAGAATAGAATACACTGGAAGGGACTTGATTCGTCAACATCTGGAGAGGTGGATGGCGATGTATCCATGCTAAAGGCAGAAGTTGAGAAACTCTCCTTGGAAGAGTGCAGATTAGATGATCAAATAAGGGAAATGCAGGAAAGGCTGAGGAGCTTGAGTGAAGATGAAAACAACCAGAAGTGGCTTTTTGTAACTGAAGAAGACATTAAGGGCATACCCTGCTTAAAGAATGAAACACTGATAGCAATTAAAGCCCCACATGGAACCACCCTGGAAGTCCCTGATCCTGAGGAAGCTGTTGATTATCCACAAAGGAGATATAGAATAATTCTAAGAAGCACAATGGGCCCTATTGACGTGTACCTCGTCAGTCAATTTGAGGAGAAATTTGAAGAGATGAACAGTGTTGAACCGCCCATGAGCTTCCCACTGGTATCAAGTTCAGGGTCTAATGAACAGCTAACAACAGACGTAGTTCCTGATGAATACAATGGAAAGGGACCCGATCCTCAAGCTCAACTCCCTTCTCATACATGTTCTGATCTAAATGCTTCACAAGAGTTTACTGGGGGGATGATGAAGATTGTTCCTTCAGATGTTGATAATGACGCAGATTATTGGCTTTTATCAGATGCTGACGTTAGCATTACAGATATGTGGAAAACGGATTCTAGTGTTGATTGGAATGGGGTGGATATGCTTCATTCTGACTTCGGAATCCTCTCAAGGCCACAAACTCCGTCTGGATATTCTGAAGCGCCATCCACGGGAGCTAACAATACCGAGAGCATGGCATCATGGACTATTTTCTCTGAAAATGAGAGCAGGGATGTAGTTTCTCACTGCAAACGAGCTGCGAGGGTGTA 1478 0.4533 MSGGAGASNRQASPSPEASNLQTRPPLKRHLAFAFTKPPFAPPDDYHNFSAADSRRATDQEAEAIVVRSPYMKRKSGVNDNEGESQEWSNTPGCSNVLNSPFKTPVSAKGGRTYNKSKVSKEGKSGPQTPISNVGSPSPLTPAGSCRYDSSLGLLTKKFINLLKHAEDGNLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGLDSSTSGEVDGDVSMLKAEVEKLSLEECRLDDQIREMQERLRSLSEDENNQKWLFVTEEDIKGIPCLKNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNSVEPPMSFPLVSSSGSNEQLTTDVVPDEYNGKGPDPQAQLPSHTCSDLNASQEFTGGMMKIVPSDVDNDADYWLLSDADVSITDMWKTDSSVDWNGVDMLHSDFGILSRPQTPSGYSEAPSTGANNTERNKATPMFIISW 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02222 478 PANTHER TRANSCRIPTION FACTOR E2F 25 447 IPR015633 GO:0000978|GO:0006357
Bva13g02222 478 MobiDBLite consensus disorder prediction 110 142 - -
Bva13g02222 478 Gene3D - 141 214 IPR036388 -
Bva13g02222 478 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Bva13g02222 478 CDD E2F_DD 228 329 IPR032198 GO:0046983
Bva13g02222 478 PANTHER TRANSCRIPTION FACTOR E2FB 25 447 - -
Bva13g02222 478 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Bva13g02222 478 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Bva13g02222 478 MobiDBLite consensus disorder prediction 82 103 - -
Bva13g02222 478 MobiDBLite consensus disorder prediction 1 142 - -
Bva13g02222 478 MobiDBLite consensus disorder prediction 447 470 - -
Bva13g02222 478 Gene3D - 219 329 - -
Bva13g02222 478 MobiDBLite consensus disorder prediction 1 22 - -
Bva13g02222 478 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Bva13g02222 478 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02222 Bva-Chr13 17233615 17238569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02222 25 467 E2F-DP Transcription Factor Family AT2G36010 57.872 5.02e-168 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Bva13g02222 E2F_CC-MB 2.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02222 K06620 - gmx:100811762 720.694