Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02200 ATGGCGACGTACTTTCATGGCAATTCAGAAATCCAAGCACCCGATGGGCTCCAAACACTTGTCCTAATGAACCCCGGTTTCATCCACTACTCCGACACAACTCAGCCGCAGCCGCCACAGCATGCCGGCAACCTTGTCTTCCTCAATTCTGCGGCCACTATTGCAGCCAATAACTCGCTCACTCCACAAAGCCTCTCACACGCGCCACCCACTCACACCCAACAATTCGTGGGCATCCCTCTGCCCACCTCCACCTCCCAGGACCCTAACCACCAATCTATGCATGCCCACCACGATGTCTCCGCCTTGCATGGGTTCGCGCCTCGCATGCAGTACAGTCTCTGGAACACAATTGACCCCAACGCGGCGGCGCGTGATACTCCACGCGCACAGCAGGGATTGTCCCTTAGTCTTTCCTCTCAGCAAGCGGGGATGGGATCGTTCCGGGTTGATCGCAACGTGGCATCGCAGGGTCAAGCGCCAGCTATTTCCGGAGAAGATGTACGCGTGCCGGGTGGGTCATCTTCTTCGGCTTCTGGGGTTACAAATGGGGTTTCAGGCATGCAGAGTGTGCTTCTGAGTTCCAAGTACTTGAAGGCAGCACAGGAACTTCTAGACGAGGTCGTCAACGTTAACAATGGGATTAAGACTGAATTGGCGAAGAAAGCTAGTGGGCACAGTAAGCTTATTGGAGAGTCATCCACAGCAGCGAGTGGAGACGGTTCAAATGGTGGTGGAGAGGCAAGTGGGAAGCGTACCTCTGAGCTTTCAACTGCTGAGAGACAGGAAATTCAGATGAAGAAGGCAAAGCTAATCAGCATGCTCGATGAGGTGGAGCAAAGGTACAGGCAGTACCATCAGCAGATGCAGATTGTGATTTCCTCATTTGAACAAGCCGCGGGGATTGGCTCAGCAAGAACTTACACATCACTTGCACTGCAAACAATTTCCAAGCAGTTTCGGTGTTTGAAAGACGCAATTACAGGCCAAATTCGAGCTGCAAATAAGAGCCTGGGAGAAGAAGATTGCTTTGGAGGAAAAATTGAAGGGTCAAGGCTCAAATACGTAGACCATCATCTGCGACAACAGAGAGCTCTCCAACAGTTGGGAATGATCCAGCACAACGCTTGGAGACCCCAAAGAGGATTGCCGGAGAGATCAGTTTCTGTTCTTCGTGCTTGGCTCTTCGAGCACTTCCTTCACCCCTACCCCAAGGATTCAGACAAACACATGCTTGCCAAACAAACGGGCCTTACCAGGGGCCAGGTTTCTAATTGGTTCATAAATGCTCGGGTTCGGCTTTGGAAGCCAATGGTGGAAGAGATGTACTTGGAGGAGATGAAGGAGCACGAACAGAATGGATCAGAAGACAAAACAAGCAAGAGCAGTGAAGATCCTACAACAAAATCTGCAGCCTCACAAGATAAAGGAGCTGGCACCGACACTGAAGCTAGAAGTTTCAATTCCAAGCAAGAAGTTGGCGCCAACCACAACGCATCTACCATTTCAATTTCTGAACCATCAACTTCACCAGCTGGGAGAAATGCGAGGAACCATTCAGGTTTCAGCTTCATTGGCTCATCAGAGCTGGAAGGCATCACACAAGGAAGTCCCAAGAAACCAAGAAACCATGATATTCTGCAGTCCCCAAGTAGTGTCCCATCAATAAACATGGATGTCAAGCCCAACGAGGCAAACACTGAGCATCTTTCAACGAAATTTGGAGATGAGAGGCAGAGCAGAGATGGATACTCTTTCATGAGCAACCAAACAAACTTCATTGGAGGTTTTGGGCAATACCCAATTGGGGAAATTGGTAGGTTTGATGCTGAACAATTCACACCAAGGTTTTCAGGCAATGGAGTTTCCCTCACTTTAGGTCTTCCACACTGTGATTCCTTATCAGGAACCCATCAAACATTTCTACCTAATCAGAACATTCAATTGGGAAGGAGATTGGACATTGGTGAACCAAATGAGTTTGGTGCCATTAACACTTCCACTCCTCATTCATCAGCTGcatttgaaaatatcaacATGCAGAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGGCCTG 2090 0.4895 MATYFHGNSEIQAPDGLQTLVLMNPGFIHYSDTTQPQPPQHAGNLVFLNSAATIAANNSLTPQSLSHAPPTHTQQFVGIPLPTSTSQDPNHQSMHAHHDVSALHGFAPRMQYSLWNTIDPNAAARDTPRAQQGLSLSLSSQQAGMGSFRVDRNVASQGQAPAISGEDVRVPGGSSSSASGVTNGVSGMQSVLLSSKYLKAAQELLDEVVNVNNGIKTELAKKASGHSKLIGESSTAASGDGSNGGGEASGKRTSELSTAERQEIQMKKAKLISMLDEVEQRYRQYHQQMQIVISSFEQAAGIGSARTYTSLALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRGQVSNWFINARVRLWKPMVEEMYLEEMKEHEQNGSEDKTSKSSEDPTTKSAASQDKGAGTDTEARSFNSKQEVGANHNASTISISEPSTSPAGRNARNHSGFSFIGSSELEGITQGSPKKPRNHDILQSPSSVPSINMDVKPNEANTEHLSTKFGDERQSRDGYSFMSNQTNFIGGFGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCDSLSGTHQTFLPNQNIQLGRRLDIGEPNEFGAINTSTPHSSAAFENINMQNPKRFAAQLLPDFVA 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02200 696 ProSiteProfiles 'Homeobox' domain profile. 374 437 IPR001356 GO:0003677
Bva13g02200 696 Coils Coil 261 288 - -
Bva13g02200 696 MobiDBLite consensus disorder prediction 228 253 - -
Bva13g02200 696 CDD homeodomain 377 438 IPR001356 GO:0003677
Bva13g02200 696 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 9 657 - -
Bva13g02200 696 MobiDBLite consensus disorder prediction 448 557 - -
Bva13g02200 696 SUPERFAMILY Homeodomain-like 378 444 IPR009057 -
Bva13g02200 696 MobiDBLite consensus disorder prediction 541 557 - -
Bva13g02200 696 SMART HOX_1 377 441 IPR001356 GO:0003677
Bva13g02200 696 SMART prehox3 186 329 IPR006563 -
Bva13g02200 696 MobiDBLite consensus disorder prediction 448 464 - -
Bva13g02200 696 Gene3D - 380 459 - -
Bva13g02200 696 MobiDBLite consensus disorder prediction 159 183 - -
Bva13g02200 696 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 657 - -
Bva13g02200 696 MobiDBLite consensus disorder prediction 222 259 - -
Bva13g02200 696 MobiDBLite consensus disorder prediction 465 534 - -
Bva13g02200 696 Pfam Associated with HOX 191 328 IPR006563 -
Bva13g02200 696 Pfam Homeobox KN domain 394 433 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02200 Bva-Chr13 17095454 17099805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02200 1 696 Homeobox Transcription Factor Family AT2G35940 53.970 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva13g02200 POX 1.1e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02200 - - qsu:112031679 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02200 13 17095454 17099805 Bva13g02200 13 17095454 17099805 ECH