Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02198 ATGGATGAAATTGAAGTCCCTCAGTATTTTATCTGCCCTGTATCTCTCCAAATCATGAAAGATCCCGTCACTGCTATAACGGGCATCACATATGATCGAGATAGCATAGAACAGTGGCTATTCAAGAACAGGAATACTTCTTGTCCTGTCACCAAACAGCCTCTCCCGAAAGATTCAGATTTGACTCCCAATCACACCCTGCGTCGCCTAATCCAAGCTTGGTGCACCCAGAATGCTTCACTTGGGGTTGATCGGATTCCGACCCCTAAGCCACCCGTTAACAAGTTTCAAGTTCTTAAGCTCCTTAAGGATCTCAGGAACTCACAGTTGCAGCTTAAAACTCTTAGGCAATTGGAACTGCTCGCTGCGGAGAACGAAAGGAATAAGAAGTGTTTGATAGAGGCTGGTGTGCCTTCGGCTATGATCgtgtttattttgagttgCTTCAGGAAAGGTAAAATCGATGAGGGTCTTGAAGAAGCTCTTAGTATATTACAGTTTGTTAAGGTTCCTGCAGAGGAAATGAAAGTGCTTCTTGCAGAAAATAACCAGATTTTGGATTCTCTAACGTGGGTTTTAGGCTGTGAGATGGAAAATTCCATTGCTGTGAAATCTCACGCAGTTTTAGTGCTCAAAGCACTCGTTCAGAAGGCAAATCCTGATATTTTCCAAAGACTCAAACTTGAGTTCTTTGAAAGAATTGtgaaaatattgagaaatgGGATAACCCAACAAGGGATAAACGCTGCTTTGCATGTCTTGTTAGGTGCTTGTCCTTGGGGAAGAAATCGAGTTATGATGGTGGAAGCCGGTCTCGTTTTTGAACTGGTTGAACTTGAATTAGAATCACCTGAGAAGAGGACCACAGAGCTTATACTGGGGATACTGTTTCATCTGTGTTCTTGTGCTGAAGGGAGAGCTCAGTTTCTGAGTCACAGAGGTGGCATTGCGGTGTTGACGGAGAGAATCTTAAGGGTGTCGCCGGCGGTGGATGACAGAGTGATATTCATTCTTTCGTTAATATCAAAGTTCTCAGGGACACAGATGGTGGTTCAAGACATGTTGATTGTTGGAACAGTGACGAAGCTTTGCATGGTGCTTCAGGCTGATAATGctacatatataaaagacaAAGCAAGGGAGATACTCAAGGCTCATTCAAATGCTTGGATGGATTCTCCTTGCTTTCCCGGACGCTCTTTTAATGAAAACTTGCATTA 1220 0.4213 MDEIEVPQYFICPVSLQIMKDPVTAITGITYDRDSIEQWLFKNRNTSCPVTKQPLPKDSDLTPNHTLRRLIQAWCTQNASLGVDRIPTPKPPVNKFQVLKLLKDLRNSQLQLKTLRQLELLAAENERNKKCLIEAGVPSAMIVFILSCFRKGKIDEGLEEALSILQFVKVPAEEMKVLLAENNQILDSLTWVLGCEMENSIAVKSHAVLVLKALVQKANPDIFQRLKLEFFERIVKILRNGITQQGINAALHVLLGACPWGRNRVMMVEAGLVFELVELELESPEKRTTELILGILFHLCSCAEGRAQFLSHRGGIAVLTERILRVSPAVDDRVIFILSLISKFSGTQMVVQDMLIVGTVTKLCMVLQADNATYIKDKAREILKAHSNAWMDSPCFPGRSFNENLH 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02198 406 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Bva13g02198 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Bva13g02198 406 SUPERFAMILY ARM repeat 98 373 IPR016024 -
Bva13g02198 406 Gene3D - 96 391 IPR011989 -
Bva13g02198 406 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Bva13g02198 406 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Bva13g02198 406 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Bva13g02198 406 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 400 - -
Bva13g02198 406 SUPERFAMILY RING/U-box 3 82 - -
Bva13g02198 406 Coils Coil 115 135 - -
Bva13g02198 406 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02198 Bva-Chr13 17086667 17088223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02198 2 396 U-box Gene Family AT3G11840 43.964 5.88e-121 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02198 - - lja:Lj0g3v0014579.1 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02198 13 17086667 17088223 Bva13g02198 13 17086667 17088223 ECH