Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02197 ATGGATCAGGAGATTGATATTCCTCCATTCTTTCTCTGCCCTGTTTCCTTAGAAATCATGAAAGATCCAGTCACCGTCTCCACGGGTATCACCTATGACAGAGAGAGTATAGAGAAATGGTTGTTTTCTGGCAAGAACAAGACTTGCCCAGTAACCAAACAACAGCTATCAGATGCTGTTGGTCTCACCCCAAACCACACTCTTCGCCGATTGATTCAAGCTTGGTGTACAATGAACGCTTCTCACGGCATCGAAAGGATTCCAACACCCAAGCCACCAATCAACAAATCCCAGATAGCAAAACTCCTCAAGGATGCTTATGAATCCCCTCAGTTACAGATTCAATGTCTCAGAAGACTCAAAACCATTGCTTCTGAGAGTGAAACCAATAGGCGCTGCATGGAAGCTGCAGGTGCTGTTGAGTTCTTAGCCTCGGTTGTACACGGCAACGTAAATTCTGCAACTTTACAAGATGCCAACCCAGAAGATGGATTTGAAGTATTGAGAACAAGTTCGGGCGATGAAGCCTTAAACATCCTCAATAGCCTTCATCTATCTGAAGCTGGCCTAAAGACACTTATATGCTTCAAAAATGGGGAATTCATTGTCTCCCTAACAAGAGTCATGCAGCAAGGAATGTATGAATCACGAGCTTACGCTGttcttttgttgaaattaatGTTTGAAGTGGCCGATCCTATCCATTTGCTCAGTCTAAGAACTGAACTGTTCGTTGAATTAGTACAAGTTTTAAAAGATCAGATTTCCCAGAAGGCATCAAAAGCTACACTACAAACACTCATCCAAATCTGTCCTTGGGGAAAAAACAGGACCAAAGCTGTGGAATCTGGGGCTGTCACGGTTTTGATCGATCTTCTCCTCGACTGCAAGGACAGGAAACCTTGTGAAATGATGTTGATGGTTTTGGACATGTTGTGTGGCTGTGCTGAGGGACGAGCTGAGTTGTTGAGCCATGGTGCTGGCCTCGCCATCGTGTCGAAAAAGATTCTAAGGATATCTACTGCGGCAAACGATAGGGCTGTGAGGATTCTATTGTCCATTTCGAAGTTCTCTGCAACTCCTAATGTCCTTCAAGAAATGCTACAACTGGGCGTGGTGGTAAAGCTCTCTCTGGTGCTTCAAGTGGACAGTGGAAACAAGGCAAAGGAGAAGGCAAGAGAGATACTTAAATTGCATGGTCGGGCTTGGAGGAATTCTCCATGCTTTCCAAGCAATTTGTTGCCTTCATATCCAGCTTA 1259 0.4416 MDQEIDIPPFFLCPVSLEIMKDPVTVSTGITYDRESIEKWLFSGKNKTCPVTKQQLSDAVGLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPINKSQIAKLLKDAYESPQLQIQCLRRLKTIASESETNRRCMEAAGAVEFLASVVHGNVNSATLQDANPEDGFEVLRTSSGDEALNILNSLHLSEAGLKTLICFKNGEFIVSLTRVMQQGMYESRAYAVLLLKLMFEVADPIHLLSLRTELFVELVQVLKDQISQKASKATLQTLIQICPWGKNRTKAVESGAVTVLIDLLLDCKDRKPCEMMLMVLDMLCGCAEGRAELLSHGAGLAIVSKKILRISTAANDRAVRILLSISKFSATPNVLQEMLQLGVVVKLSLVLQVDSGNKAKEKAREILKLHGRAWRNSPCFPSNLLPSYPA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02197 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Bva13g02197 419 SUPERFAMILY RING/U-box 4 83 - -
Bva13g02197 419 Gene3D - 83 399 IPR011989 -
Bva13g02197 419 CDD RING-Ubox_PUB 11 54 IPR045210 -
Bva13g02197 419 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Bva13g02197 419 PANTHER WDSAM1 PROTEIN 3 418 IPR045185 GO:0061630
Bva13g02197 419 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Bva13g02197 419 SUPERFAMILY ARM repeat 99 388 IPR016024 -
Bva13g02197 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 418 - -
Bva13g02197 419 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02197 Bva-Chr13 17079276 17080535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02197 1 418 U-box Gene Family AT2G35930 59.242 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02197 - - gmx:100809123 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02197 13 17079276 17080535 Bva13g02197 13 17079276 17080535 ECH