Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02192 ATGGACACCGATGTTGGCCTTGCTCTCAAGAAGGCGAAGATTGTCAAGGTAAAATTGGAGGCTCTCGAGCGATCTAACGCCGCCAACAGGAGCCTTCCAGGATGCAGCCCTGGGTCGTCATCCGACCGTACCCGCACCTCCGTGGTCAACGGCTTGAAAAAGAAGCTAAAGGACTCCATGGAAAGCTTCAATAACCTCAGGCAACATATATCGTCGGAGTATAGGGTGACCGTACAGCGTAGGTATTTCAGCGTCACCGGCGAGAATCCAGATGAAAAGACTCTCGACCTCTTGATCTCTACAGGTGAGAGTGAGACTTTCCTTCAGAAAGCCATCCAAGAACAAGGTAGAGGTAGGATTCTGGACACCATCAATGAAATTCAAGAAAGACATGATGCTGTGAAAGAGATTAAGAAGAACCTGAAGGAGTTGCATCAAGTGTTCCTTGACATGGCAGTGTTGGTGGAAGCACAGGGTGAGCAATTAGACGATATTGAAAGCCATGTTGCAAGAGCAAACTCATTTGTGAAGACCGGAGCACAGCAGTTGCAGGTTGCAAGGAAGCAACAGAAGAACACCAGGAAATGGACTTGTTATGCTATCATGCTTCTGCTGGTGATCATCCTGTTTGTGGTGCTCTTCACTGAGACCATGGGAAAATA 662 0.4789 MDTDVGLALKKAKIVKVKLEALERSNAANRSLPGCSPGSSSDRTRTSVVNGLKKKLKDSMESFNNLRQHISSEYRVTVQRRYFSVTGENPDEKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIKKNLKELHQVFLDMAVLVEAQGEQLDDIESHVARANSFVKTGAQQLQVARKQQKNTRKWTCYAIMLLLVIILFVVLFTETMGK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02192 220 ProSitePatterns Syntaxin / epimorphin family signature. 130 169 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bva13g02192 220 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 124 186 IPR000727 -
Bva13g02192 220 Gene3D - 120 217 - -
Bva13g02192 220 PANTHER SYNTAXIN 1 215 IPR045242 -
Bva13g02192 220 Pfam Syntaxin 1 159 IPR006011 GO:0016020
Bva13g02192 220 CDD SynN 1 111 IPR006011 GO:0016020
Bva13g02192 220 Gene3D - 1 81 - -
Bva13g02192 220 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 1 215 - -
Bva13g02192 220 Coils Coil 124 144 - -
Bva13g02192 220 Pfam SNARE domain 160 212 IPR000727 -
Bva13g02192 220 CDD SNARE_syntaxin1-like 123 184 - -
Bva13g02192 220 SMART tSNARE_6 119 186 IPR000727 -
Bva13g02192 220 SUPERFAMILY t-snare proteins 9 179 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02192 Bva-Chr13 17049819 17050937 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02192 1 198 SNARE and Associated Proteins AT3G11820 82.323 1.14e-120 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02192 K08486 - gmx:100809258 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02192 13 17049819 17050937 Bva13g02192 13 17049819 17050937 ECH