Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02189 ATGGCTGCCACAGCTATTGCTTCCTCTTCCATCTGCAATAGAATCTATAACTTGTCCCTTACCCTCTCTTCCATTTCAATCACTCCCAGCAACTTCCCACAACGACCCATATCCTTCAAACCCCTCAATCTCAAATCCCAATTGTTCAACAATACTCTCACTGTCACtgctcctttttctctttatcatCTTCGCATAGCTTCTGCTGCTTTCGATGGCTCCCAAGTTGATGAAGACACCCAACAAGAAGACCCAAAAGCAGAACCCTTTGAAGAACAAGAGGAGCAAAAGGCAACCGATTCTAGCGAAGCCGGGAGGCTCTTTGTGGGAAATTTGCCTTACTCTATGACTTCATCCCAGTTGGCAGAGATTTTTGGGGAGGCTGGCAACGTGGTCACTGCGGAGATTGTCTATGACCGCGTTACGGATAGAAGCAGAGGATTTGCATTTGTTACAATGGGAAGTGTCGAGGATGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTCAATTTGGAGGTAGGACTGCGAAGGTAAACTTTCCAGAAGTGCCAAGAGGAGGTGAAAGGCTAGTAATGGGGCCAAAAGTAAGAAACAACTATAAAGGCTTCGTGGACAGCCCTCACAAGATCTATGCAGGAAACCTTGGTTGGGGAGTCACTTCACAGGGTCTTCGAGATGCTTTTGCTGGCCAGCCAGGATTGTTGAGTGCCAAGGTCATCTATGAGAGGAACACCGGAAGATCTCGAGGTTACGGCTTTGTCTCTTTTGAAACTGCGGAGCATGTAGAGTCTGCGTTAAATGCTATGAACGGTGTGGAGGTTCAAGGCCGCACTTTACGACTGAATTTGGCTGCAGAGAGGACGGCTGCATCTTCTCAACCTCGAGAAATTGAGCAAAATACAGAGAACGATGGCGTTGATACCTCTGAATTGCTCTCTAGTATTAGCACATG 953 0.4607 MAATAIASSSICNRIYNLSLTLSSISITPSNFPQRPISFKPLNLKSQLFNNTLTVTAPFSLYHLRIASAAFDGSQVDEDTQQEDPKAEPFEEQEEQKATDSSEAGRLFVGNLPYSMTSSQLAEIFGEAGNVVTAEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRMFDGSQFGGRTAKVNFPEVPRGGERLVMGPKVRNNYKGFVDSPHKIYAGNLGWGVTSQGLRDAFAGQPGLLSAKVIYERNTGRSRGYGFVSFETAEHVESALNAMNGVEVQGRTLRLNLAAERTAASSQPREIEQNTENDGVDTSELLSSIST 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02189 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Bva13g02189 317 MobiDBLite consensus disorder prediction 73 102 - -
Bva13g02189 317 CDD RRM_HP0827_like 106 182 - -
Bva13g02189 317 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 4 296 - -
Bva13g02189 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 280 IPR000504 GO:0003723
Bva13g02189 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Bva13g02189 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Bva13g02189 317 PANTHER OS02G0815200 PROTEIN 4 296 - -
Bva13g02189 317 SMART rrm1_1 106 179 IPR000504 GO:0003723
Bva13g02189 317 SMART rrm1_1 209 282 IPR000504 GO:0003723
Bva13g02189 317 MobiDBLite consensus disorder prediction 290 317 - -
Bva13g02189 317 Gene3D - 68 188 IPR012677 -
Bva13g02189 317 SUPERFAMILY RNA-binding domain, RBD 98 182 IPR035979 GO:0003676
Bva13g02189 317 Gene3D - 192 301 IPR012677 -
Bva13g02189 317 SUPERFAMILY RNA-binding domain, RBD 204 295 IPR035979 GO:0003676
Bva13g02189 317 MobiDBLite consensus disorder prediction 79 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02189 Bva-Chr13 17040509 17042137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02189 102 310 Eukaryotic Initiation Factors Gene Family AT1G49760 24.880 1.89e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02189 - - gmx:100814852 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02189 13 17040509 17042137 Bva13g02189 13 17040509 17042137 ECH