Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02188 ATGGCTATGCAAGCCTTTTGTTTAAAAGAACATGATGGAATTGTCCAAAATTCTGTGGGACAGTTGTCATCTGTATCTTCAGCCCCCTGGTGGAATGCCTTTGGATCTCAATCAATTTATGGAGAGTCTTGTGGCCCAGTCAAGACTTTCTCATTGGAGCTCCCCAACTATGTAGAACAACTTGCTGCCACTCCCACTAAGCCGGCAGGGAGAGGAGCTGAACAACTGTTTGATAAAGGACATACAACTCAGTTCACTATCTTTCCAGgAAATTGCAAAATGTCAGCTGATGCACAAAAACCTCGGACAGCCATATCCGTGCAATCATCAGTTCCAGATTCTCGTGCTCGTTTCGAGCTAGGCTTCAGTCAGCCTATGATCTGTGCAAAATATCCTGATATGGATCAATTTTATGGGCTCTTCTCAAGCTATGGACCTCAAGCTTCGGGCCGTATAATGCTGCCACTTAACTTGACATCCGATGATGGACCAATCTATGTAAATGCTAAGCAGTACCATGGAATCATGAGACGTCGCCAATCACGTGCAAAGGCTGTCATGgagaataaaatcacaaaacgTCGCAAGCCCTATATGCATGAATCGCGTCATCTCCATGCAATGCGTCGACCAAGAGGATGTGGTGGTCGATTTCTGAATACAAGGGATTTGAACTATGAAAATGGTAAAAGTGGAAGCGAAGTGTATAGGAGCGGTGAAGGGCAACTGCAGTGCAGTGGTTCTCAGAGTTCTGAAGATGGAACTTTGAATTCATCAAAGGAAACCAATGGCCGCAGTCCAAACATTTCAGGTTCAGAAGTGACTAGCAGCATGTATTCAAGGGGAGGTCTTGATAGCTTTACAGTGAATCATCTTGGATCAGCTGTGCACTCTCTGGCAGACATGTTAGAAGGTGGGCGTGGTATCGTTATGCCCACAAAATGGGTTGCAGCAGGAGGTAGTTGCTGCAACCTTAACGTTTA 983 0.4456 MAMQAFCLKEHDGIVQNSVGQLSSVSSAPWWNAFGSQSIYGESCGPVKTFSLELPNYVEQLAATPTKPAGRGAEQLFDKGHTTQFTIFPGNCKMSADAQKPRTAISVQSSVPDSRARFELGFSQPMICAKYPDMDQFYGLFSSYGPQASGRIMLPLNLTSDDGPIYVNAKQYHGIMRRRQSRAKAVMENKITKRRKPYMHESRHLHAMRRPRGCGGRFLNTRDLNYENGKSGSEVYRSGEGQLQCSGSQSSEDGTLNSSKETNGRSPNISGSEVTSSMYSRGGLDSFTVNHLGSAVHSLADMLEGGRGIVMPTKWVAAGGSCCNLNV 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02188 327 SMART cbf3 160 221 IPR001289 GO:0003700|GO:0006355
Bva13g02188 327 Gene3D - 161 223 - -
Bva13g02188 327 ProSiteProfiles NF-YA/HAP2 family profile. 161 221 IPR001289 GO:0003700|GO:0006355
Bva13g02188 327 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 5 325 - -
Bva13g02188 327 MobiDBLite consensus disorder prediction 230 277 - -
Bva13g02188 327 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 218 IPR001289 GO:0003700|GO:0006355
Bva13g02188 327 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 5 325 IPR001289 GO:0003700|GO:0006355
Bva13g02188 327 PRINTS CCAAT-binding transcription factor subunit B signature 164 186 IPR001289 GO:0003700|GO:0006355
Bva13g02188 327 PRINTS CCAAT-binding transcription factor subunit B signature 195 218 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02188 Bva-Chr13 17035373 17039333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02188 6 325 CCAAT-HAP2 Transcription Factor Family AT3G05690 40.988 4.42e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bva13g02188 CBFB_NFYA 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02188 K08064 - gmx:100527677 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02188 13 17035373 17039333 Bva13g02188 13 17035373 17039333 ECH