Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02186 ATGAACAACACAACTGATTCTGGTGAGTTCCTTGGCTCTAACAATATCAGTGGCTTTGGCTATGGAATTGGAGTTTCAGTTGGAATTCTAATGCTCATTACAATTATCACCCTTGCCACCTACTTCTGCACCCGCAGACAGCCACCGACGGCTCCGGCTATTCAGAGAAATGCTCCCATTTTCCTTGAACCACAGCACTCGGCTGTCGATGTGGGGCTGGACGAAGCTACAATTCTGAGTTATCCACAGATGTTGTACTCTGAAGTGTCAGATTCCACTGCCACGTGCTGTTCCATTTGTCTGGGAGATTACAAGGATACTGATATTCTTCGGCAGTTGTCCGATTGCGGACACCTCTTCCACATCAAGTGCATAGACCCATGGTTGAGGCTCAATCCCACTTGTCCGCTCTGCAGAACATCTCCAATCCCAACACCACTATCAACACCTCTGGCGGAAGTGGTTCCATTAGCGAGCAGGCGAGATTA 488 0.4857 MNNTTDSGEFLGSNNISGFGYGIGVSVGILMLITIITLATYFCTRRQPPTAPAIQRNAPIFLEPQHSAVDVGLDEATILSYPQMLYSEVSDSTATCCSICLGDYKDTDILRQLSDCGHLFHIKCIDPWLRLNPTCPLCRTSPIPTPLSTPLAEVVPLASRRD 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02186 162 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 162 - -
Bva13g02186 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 143 IPR013083 -
Bva13g02186 162 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 162 IPR045899 -
Bva13g02186 162 SUPERFAMILY RING/U-box 80 144 - -
Bva13g02186 162 CDD RING-H2_PA-TM-RING 96 139 - -
Bva13g02186 162 SMART ring_2 97 138 IPR001841 -
Bva13g02186 162 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Bva13g02186 162 Pfam Ring finger domain 97 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02186 Bva-Chr13 17023100 17023588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02186 6 159 C3H Transcription Factor Family AT2G35910 60.625 1.07e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02186 - - gmx:121172638 241.121