Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02175 ATGTCTATAAACCATTTCTCTTTGGACATTCCAGAGACGACGCCCTGGTGGAGTGCCCAGCAACAGCACCAGCCCTTACCCTTACCCTTACCCTTGCCCGCCCTCATGGAACCAATCCAAAACCAGAATCCATCCACTTCTGGACCACCCACTTACCCTTCTGCTTCTTGGTCCTCTCAACTctaccaccaccaccatcaaCAAACCACCTCCACTTGGCTCAATTCTCACTCTCCCGTGAATTCCATTTCCGTGTACCCCGCCAGTACacataataacaacaacagcaacatCTCCTCCTCCTCGTCTTCCCGTTTCAACCTTAATCATGATGAAGACGACGATGAAGAATACGACAACGCAGTACAAGCAGTTAACGTTAGCATTGATGACCAATCCGGTTCCCTAGACAAACAAGACCATCtcgaaaatgaaaaggaaccCATGTTCGAGAAGCCATTGACCCCCAGCGACGTTGGCAAGCTCAACCGCCTCGTCATCCCCAAACAGCACGCCGAGAAGTACTTCCCGCTCGGCGCTGCCGGTGACTCGGGCGAGAGCCGGGGGTTACTGCTGAGTTTCGAGGACGAGTCCGGCAAGTGCTGGCGGTTCCGCTATTCCTATTGGAACAGCAGCCAGAGCTATGTGTTAACCAAAGGCTGGAGCCGTTACGTGAAGGAGAAGCGTCTAGATGCTGGCGACATCGTTTTGTTCGAGCGCCACCGCCTCGATTCCCAACGCCTGTTTATCAATTGGAGGCGCCGCCAGCAAAGTGCCACTGCGCCGGCGCACATTAGCCGAACTCCGAGAGGGGATAGCAACAATGGCGTGGGCTTGGGCGTGGGCGTGGGGTGGACCAGAGCCTTCTATTCTGCGCACCCTTATCCTACGCATCAGCCCTTGCCATACCAACCTGACTGTCTTCATGCAgGTAGAGGATCCCAAAGCCAAGTTGAGAGCCAAACGACGCCGGCGGGGAACAGCTCCAGGGTTCTGAGGCTGTTTGGGGTGAACATGGAATGCCAAGAACCCCAAGAATCCGGATCCTCAAGACCCGAATACTCGTACATGTCATCAACCCGGGGTACACCCACCCACCATTTCTACCATCATCAAGCTTCTTATTCCCCAAACACCCACATGGATGTCAACCAGATGAGAAATCGCCGAGGATA 1175 0.5166 MSINHFSLDIPETTPWWSAQQQHQPLPLPLPLPALMEPIQNQNPSTSGPPTYPSASWSSQLYHHHHQQTTSTWLNSHSPVNSISVYPASTHNNNNSNISSSSSSRFNLNHDEDDDEEYDNAVQAVNVSIDDQSGSLDKQDHLENEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGAAGDSGESRGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDIVLFERHRLDSQRLFINWRRRQQSATAPAHISRTPRGDSNNGVGLGVGVGWTRAFYSAHPYPTHQPLPYQPDCLHAGRGSQSQVESQTTPAGNSSRVLRLFGVNMECQEPQESGSSRPEYSYMSSTRGTPTHHFYHHQASYSPNTHMDVNQMRNRRG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02175 391 CDD B3_DNA 148 246 IPR003340 GO:0003677
Bva13g02175 391 MobiDBLite consensus disorder prediction 310 329 - -
Bva13g02175 391 ProSiteProfiles B3 DNA-binding domain profile. 150 256 IPR003340 GO:0003677
Bva13g02175 391 Gene3D - 139 265 IPR015300 -
Bva13g02175 391 MobiDBLite consensus disorder prediction 85 117 - -
Bva13g02175 391 MobiDBLite consensus disorder prediction 38 63 - -
Bva13g02175 391 SMART B3_2 150 256 IPR003340 GO:0003677
Bva13g02175 391 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 79 353 IPR044800 GO:0003700
Bva13g02175 391 SUPERFAMILY DNA-binding pseudobarrel domain 145 257 IPR015300 -
Bva13g02175 391 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 79 353 - -
Bva13g02175 391 MobiDBLite consensus disorder prediction 369 384 - -
Bva13g02175 391 MobiDBLite consensus disorder prediction 85 106 - -
Bva13g02175 391 Pfam B3 DNA binding domain 150 256 IPR003340 GO:0003677
Bva13g02175 391 MobiDBLite consensus disorder prediction 369 391 - -
Bva13g02175 391 MobiDBLite consensus disorder prediction 28 63 - -
Bva13g02175 391 MobiDBLite consensus disorder prediction 308 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02175 Bva-Chr13 16970225 16974132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02175 143 348 RAV Transcription Factor Family AT5G06250 50.926 5.50e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva13g02175 B3 8.2e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02175 - - aprc:113872948 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02382 04 22064771 22065987 Bva13g02175 13 16970225 16974132 BWGD
Bva13g02175 13 16970225 16974132 Bva13g02175 13 16970225 16974132 ECH