Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02170 ATGGCGACGATCAAAAGGATAATTGGAACGACTCGTACTTTGTCTCGCTCCTCCTTTATTCCTTCTGTTCGTATCATTTTTTGCAGGGGAATTGCATACAAGCTTTTCGTTGGAGGTTGCTTGCTGGACCAAGACAATCAAAATGTCACCGAAGCGGGATTGTCATCTTACACAACAGAGAAGGGATTATCAGAAGCATTTTCTCAACAGGGTCAAGTTATTGAAGcTAAAATTGTAACGGATAGGGTGTCTGACAGATCAAAAGGCTTTGGGTTTGTCACCTTTGCCTCAGAGGATGAAGCTGAGAATGCCATAGCAGGGATGAATGGAAAGGCGCTAAATGGACGTGTTATATTTGTCGATTATGCAAAACCCAAATCGAATTTTGGCGAGGGAATGCCAATTGCCAGAGGCCCTCCTGAACCTACAGCTAACAGTTG 440 0.4364 MATIKRIIGTTRTLSRSSFIPSVRIIFCRGIAYKLFVGGLSSYTTEKGLSEAFSQQGQVIEAKIVTDRVSDRSKGFGFVTFASEDEAENAIAGMNGKALNGRVIFVDYAKPKSNFGEGMPIARGPPEPTANS 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02170 132 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 104 IPR000504 GO:0003723
Bva13g02170 132 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 1 131 - -
Bva13g02170 132 Gene3D - 22 115 IPR012677 -
Bva13g02170 132 SMART rrm1_1 34 107 IPR000504 GO:0003723
Bva13g02170 132 SUPERFAMILY RNA-binding domain, RBD 33 124 IPR035979 GO:0003676
Bva13g02170 132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Bva13g02170 132 PANTHER TRANSFORMER-2-RELATED 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02170 Bva-Chr13 16944371 16946626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02170 35 113 Eukaryotic Initiation Factors Gene Family AT2G23350 32.911 2.10e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02170 - - jre:109002136 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02170 13 16944371 16946626 Bva13g02170 13 16944371 16946626 ECH