Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02141 ATGCCGGGAACTAGAGAGAGTGATGTAGCAGCGCGTAATCATGATTCACCTGAGAATGATCCTCAAAAACCTTCTGATCCCAAAGAACAGGTAGACCTTGATGATGAGAATGATCAGGAGGAGACAACGGAGGAAGAAATTGAGTATGAAGAAGTAGAGGAGGAGgtagaagaggaagaagaggaggaagatAAGGGGGCCTCCAATGGAGATTATGAGGAGGAGACAAAAGTTGCTGACATGgaggatgaagatgaaaaaaagaagcacgCAGAGCTCCTTGCACTTCCACCTCATGGGACAGAGGTTTACCTTGGTAGTGTTCCTCATACCGCTTCTGAAGAGGATTTGAAGAACTTTTGTGGATCTGTGGGAGAAGTCTTAGAGGTTAGGATTATGAAGGAAAAAGGATCAGGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAGCAAGCTTCTAAGGCCATTGAGAAGCTAAATAATTGTGAAGTTAAGgggagaaaaataaagtgctCAACATCCCAAGCAAAGCATAAGTTGTTCATTGGTAATGTCCCAAGAAATTGGACACCAGAAGATATGAGGAAGGTTGTAACAAAAATTGGGCCTGGAGTCATTTCTGTGGAATTGTTCAAGGACCCACAGAATTCCAGCCGTAATCGGGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACCCAAATTTTAAGCTTGACAATAATGCTCCTACAGTGAGTTGGGCTGACCATAAGAATTCTGAATCATCTGCTGCCTCCCAGGTAAAGGCAGTGTACGTCAAGAATCTACCAGAAGACATTACCCAAGATCGGCTTAGGGAACTATTTGAACATCATggcaaaattacaaaagtggTTCTCCCTCCTGCAAAAGCAGGACAAGAAAAGAGCAGATTTGGTTTTGTTCACTTTACTGAAAGGTCAAGTGCCATGAAGGCCTTGAATAATACTGAGAAGTATGAAATTGACGGCCAAGTTTTGGAGTGCTCACTAGCAAAGCCCCAAGCAGATCAGAAATCATCTGGGCTGCCAAATTCACAGAAGCCTGTTGTACTTCCAACTTACCCACCTCATCTTGGTTATGGCGTAGTTGGGGGTGCTTATGGTACTTTGGGTGCAGGATACGGTGCTGCAGGCTTCACACGACCGATGATTTATGGTAGGGGAGCAACTCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCTGATGGAAGAATTGGATACGTGTTGCAACAACCTGCATTGCAACCTCACTCCCCTCAACCAGCACTCCGGAGTGGTGGGAAGTCGGGTGGCAGCTCAAGTGGTGGGAAACGCACGAATGTTAATAACCGATATAACCCTTACTA 1409 0.418 MPGTRESDVAARNHDSPENDPQKPSDPKEQVDLDDENDQEETTEEEIEYEEVEEEVEEEEEEEDKGASNGDYEEETKVADMEDEDEKKKHAELLALPPHGTEVYLGSVPHTASEEDLKNFCGSVGEVLEVRIMKEKGSGEAKGYAFVTFKTKEQASKAIEKLNNCEVKGRKIKCSTSQAKHKLFIGNVPRNWTPEDMRKVVTKIGPGVISVELFKDPQNSSRNRGFAFIEYYNHACAEYSRQKMSNPNFKLDNNAPTVSWADHKNSESSAASQVKAVYVKNLPEDITQDRLRELFEHHGKITKVVLPPAKAGQEKSRFGFVHFTERSSAMKALNNTEKYEIDGQVLECSLAKPQADQKSSGLPNSQKPVVLPTYPPHLGYGVVGGAYGTLGAGYGAAGFTRPMIYGRGATPAGMAMMPMLLPDGRIGYVLQQPALQPHSPQPALRSGGKSGGSSSGGKRTNVNNRYNPY 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02141 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 263 IPR000504 GO:0003723
Bva13g02141 469 SMART rrm1_1 276 349 IPR000504 GO:0003723
Bva13g02141 469 SMART rrm1_1 102 175 IPR000504 GO:0003723
Bva13g02141 469 SMART rrm1_1 182 259 IPR000504 GO:0003723
Bva13g02141 469 MobiDBLite consensus disorder prediction 435 469 - -
Bva13g02141 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 346 IPR000504 GO:0003723
Bva13g02141 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Bva13g02141 469 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 247 IPR000504 GO:0003723
Bva13g02141 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Bva13g02141 469 PANTHER GEO13361P1-RELATED 14 465 - -
Bva13g02141 469 PANTHER - 14 465 - -
Bva13g02141 469 MobiDBLite consensus disorder prediction 70 87 - -
Bva13g02141 469 Gene3D - 263 371 IPR012677 -
Bva13g02141 469 MobiDBLite consensus disorder prediction 31 69 - -
Bva13g02141 469 MobiDBLite consensus disorder prediction 1 87 - -
Bva13g02141 469 Gene3D - 182 262 IPR012677 -
Bva13g02141 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 353 IPR000504 GO:0003723
Bva13g02141 469 Coils Coil 33 69 - -
Bva13g02141 469 MobiDBLite consensus disorder prediction 8 30 - -
Bva13g02141 469 Gene3D - 27 181 IPR012677 -
Bva13g02141 469 SUPERFAMILY RNA-binding domain, RBD 97 265 IPR035979 GO:0003676
Bva13g02141 469 MobiDBLite consensus disorder prediction 446 469 - -
Bva13g02141 469 CDD RRM_SF 103 175 - -
Bva13g02141 469 SUPERFAMILY RNA-binding domain, RBD 271 357 IPR035979 GO:0003676
Bva13g02141 469 SMART rrm2_1 102 175 IPR003954 GO:0003676
Bva13g02141 469 SMART rrm2_1 276 349 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02141 Bva-Chr13 16813921 16818549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02141 103 448 Eukaryotic Initiation Factors Gene Family AT4G34110 23.298 1.38e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02141 K13161 - cit:102619718 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02141 13 16813921 16818549 Bva13g02141 13 16813921 16818549 ECH