Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02092 ATGCGTTCCAATTCTCATTCTGCTTCCTCAGCTGGTACTGGTACCAGCAGAAGCTCTGCTGCAGGAACAGGGCGCCACCCAGTGTACCGTGGGGTAAGGCGTAGGAGTAGTGGGAAATGGGTGTCTGAAATCAGAGAGCCCAAGAAGCCTAATAGGATTTGGTTGGGCACATTCCCTACACCAGAAATGGCCGCCGTTGCCTATGATGTGGCTGCTCTTGCTCTCAAGGGTAAGGATGCTGACCTCAACTTTCCCAACTCTGCGTCTTCTCTCCCTGTTCCTGCTTCTTCTGCTGCCCGTGATATTCAGGTGGCTGCAACTAgcgctgctgctgctgctggtgCAGCCAGAGATGCTTTATCTGGGCTTGAGGGAAATGAAGCAAGGAACTTTGTTCACGACTCAGTGCCACAAGTCAACACAGGAGTGGCTGAGTTCGTCGACGAGGATTTGATCTTTGACATGCCAAATGTTCTAATGAATATGGCAGAGGGAATGCTCTTGAGCCCTCCTCATTTGGACATTGCCGGGGACGCTTCTGCCTACGAATACTTTAATTTCGAGGATCCAAACCTTTGGAAATTTCCTTA 590 0.4831 MRSNSHSASSAGTGTSRSSAAGTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGKDADLNFPNSASSLPVPASSAARDIQVAATSAAAAAGAARDALSGLEGNEARNFVHDSVPQVNTGVAEFVDEDLIFDMPNVLMNMAEGMLLSPPHLDIAGDASAYEYFNFEDPNLWKFP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02092 196 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Bva13g02092 196 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Bva13g02092 196 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Bva13g02092 196 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Bva13g02092 196 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Bva13g02092 196 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Bva13g02092 196 MobiDBLite consensus disorder prediction 1 41 - -
Bva13g02092 196 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Bva13g02092 196 MobiDBLite consensus disorder prediction 1 22 - -
Bva13g02092 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 5 196 - -
Bva13g02092 196 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Bva13g02092 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02092 Bva-Chr13 16559487 16560338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02092 14 196 AP2-EREBP Transcription Factor Family AT2G36450 61.053 2.91e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva13g02092 AP2 2.3e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02462 04 22457584 22458997 Bva13g02092 13 16559487 16560338 BWGD
Bva13g02092 13 16559487 16560338 Bva13g02092 13 16559487 16560338 ECH