Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02085 ATGGACATGGAGAGCTCACGTAGGTCGTTTGATAGATCGAGGGAAGCAGGTATAAAGAAACCCCGATTGACAGACGAACTCGAGCGCGTCCCGAATTCGAGTATCAGACAGTTTCCTCAGCGACAAGTAGCTTCTGGGATTAATACGTTTGCATCAGCGAGGTTTAAAACAAATGATAGAGAATCCGAGAGCAATGATTCGGGTCGTGGTGGATACCAGCCTCAGCAGCCACTGCATCAAGAGCTTGTAACTCAGTATAAAACCGCACTTGCTGAGCTGACTTTCAATTCGAAGCCCATAATTACCAACTTGACTATCATTGCAGGCGAGAACGTTTATGCAGCAAAGGCAATTGCCGCCACTGTCTGTGCTAACATTATAGAGGTTCCTAGTGAACAAAAGCTGCCATCCCTTTATCTTTTAGACAGTATTGTTAAGAATATCGGGCGggattatataaaatattttgctgCCAGACTACCTGAGGTATTCTGCAAGGCATATAGACATGTAGATTCTTCAGTCCATCAAAGTATGAGACATCTTTTTGGAACATGGAAAGGGGTTTTTCCTCTTCCAACCCTTCAGATGATTGAGAAAGAACTTGGCTTCACTCCTGCAGCCAATggttcatcttcttcatctaCATTGAGGAGCAATTCACCATCACAACGTCCACCTCATAGTATCCATGTCAATCCCAAGTATTTAGAAAGACAGCGACTCCAACAGTCCAACAGGACTAAAGGAATAGCTAACGATATGATGGGAGCTATTGCAAACTCAACTGAGGATGCAGAGAGGCCAAATAGAGCTTTGGGTGGTGGACGGCCTTGGGCAGATCCATCTGTTAACATGCATAACATTCAGCAGTCTCATAGAGATGCATTTAATGATTCCGTTCATGAAAAGAGCACCGGTGCATCCAATATAGGCAATGAATATAATTCTGATATGTCTCGGAATTTTGGCTTGGGTGTTGGAAGAACTGGTGGTAGGATCTCTGAATTAGGACATGACAAATCTCGGTACAAAGCTGCTACTGCTGGTGTTGCGGAGACTGTAGCTGACCAAAGAAATGGTTTCAGTATTAAGCATGGTCTTTTTAATCACGAAGGTCCCAAGTCCATGAATTTAGATGCAAACCATCAGACAGCACAAGGCTTAACTAGCATTAGAAGCAATGTAATGTCAAGTAGCTGGAAGAATTCTGAGGAAGAGGAGTTCATGTGGGATGGTATGAACTCTGGGTTGACTGATCGTGGTGCATCTAATGTTCCTAGCAGCTTGAGCAAAGATCATTGGACAGCtgataatgaaaatttgGCAATTGAGGATCACCTCCCAATCCCTCGCCATTTTGGGGCAAAGGTTGATCCAGAAACATCCACTGAATCTCTATCCACTCAAAAGAAACAACTGCCAGCTTTTAGTCACCGTCCATCATTACCGTGGCAATTGCAGGAGCAGCACTCAATTGATGGGCTAGACCATAGGCAAGTTCGCTCAGAAGACTATGCATCCGGTCTTGGTGATTTGCCGACCAGTTCTTCGATCAGGATGGGGAACCCCCCTCTCTTGACAAATGCAACAACAGGGTCAGCCGGAATGGTGGGACTACAGCAATTTACTGCAAGAGCTGGCTCCCTCTCTGGTCAGTCATCTTTGAGACAACAGTCTCCATCACCTCTGCGCCATCCAAATGTGGCTGAGCAAGACCACTCACAGATTCTTAAGACATCTCAAATTTCTGGGAATCTGCAAAGCAAAAATTTTCGAGATTCATCATCTGCTCCTCCTCCTAATGTTCAAGTCAGTAACATACGAAGGTCGCAGCCAAAGGATCCACGAGGACATTTATCTTCAGTGGCTTCTTTTCCGCAAAGACACCAAAGTGCAGTTTCACAACAGCAGCAACTGGGCTCCTTTGAGAGTGAAGTTTCTGATAAGACTGAGAAGCATCCCCAGGCTGAAGCTACTCTCGCTGCAGAAACTTCACAACAGCCAACCACAAGTAGTTTGTTAGCCGCAGTTATGAAGAGTGGGATTTTCTCAAACAATTCAATTACCAGTAGTGTACCTAATTTAAGTTTCCTGGATACAAAGAACCTGCCATCACAATTAGGGGCTCAGCCTCCCCAGCCGGTTGGATCTTCTACCTCATTAATTTCTTCTGGCCTTGAGGTTGCATCACCGTCTTCTTTAGGTCCTTCTCCGAATGATGAGTCATCTACTCTGCCAAATATATCTCAAGGAAAGGTTGGACAACCACCAAGGCCACCTCCTCAACGACCAGCTCCCTCGTTTGTGAGTAGTGCCTCAGCTCAGACCTCAAATGTCACCCATAGTACCTCAAATCCAATTTCAAACCTTTTAAGCTCCTTAGTTGCGAAAGGGTTGATATCTGCTAAAACAAGGTCGGTGCCAGCTGGGATGCAGACACAATTAGAGGACCAAAGCCAGAACATTACCACCAGTAACTCCTTGCCGGTTGCTTCTATTCCTGGTCCTGCAGCCACCCCTGCATCATCGACTGGGGATGATCTAGACCATGATGCCAAAAGCTCTGTAGCTATATCTCAATCAACTGCCACAGAAATAAGAAATCTCATTGGTTTTGAGTTTAAGCCTGATGTAATCCGAGAATTGCATCCAGATGTAATTAGAGATCTACTTGATGATCTTCCGCATCATTGCAGTGCTTGTGGCCTAAGGCTTAAACATCAAGAACAGTTTAATAGACACTTGGAGTGGCACGCTACAAGAGAAGGAGAACAAAATGGTCTAATTAAAGCATCAAGAGGATGGTATGCAAAATCAAGCGATTGGATTGGCATAAATGAGGCTGAATTCCCATCTGAGTGTGAGCATACTGATTCTCTAGACATAAATGTCAAGACAAGAGACAACATTGAACATGATGAGATGGTTCCAAGAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGTGAGATTTTTGAAGATGTTTACTGTCAAGAAAGGGATGAGTGGATGTTCAAAGGCGCTGCTTACATGACTATCTCAGATAGCGATGGCGAGATGGGTAGTGGTCCAATCATTCATGCGAAATGCTTATCAAGGAGCTCCATATCAAGTGTTGCTGAAATGGAACATGATTG 3140 0.4392 MDMESSRRSFDRSREAGIKKPRLTDELERVPNSSIRQFPQRQVASGINTFASARFKTNDRESESNDSGRGGYQPQQPLHQELVTQYKTALAELTFNSKPIITNLTIIAGENVYAAKAIAATVCANIIEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRHVDSSVHQSMRHLFGTWKGVFPLPTLQMIEKELGFTPAANGSSSSSTLRSNSPSQRPPHSIHVNPKYLERQRLQQSNRTKGIANDMMGAIANSTEDAERPNRALGGGRPWADPSVNMHNIQQSHRDAFNDSVHEKSTGASNIGNEYNSDMSRNFGLGVGRTGGRISELGHDKSRYKAATAGVAETVADQRNGFSIKHGLFNHEGPKSMNLDANHQTAQGLTSIRSNVMSSSWKNSEEEEFMWDGMNSGLTDRGASNVPSSLSKDHWTADNENLAIEDHLPIPRHFGAKVDPETSTESLSTQKKQLPAFSHRPSLPWQLQEQHSIDGLDHRQVRSEDYASGLGDLPTSSSIRMGNPPLLTNATTGSAGMVGLQQFTARAGSLSGQSSLRQQSPSPLRHPNVAEQDHSQILKTSQISGNLQSKNFRDSSSAPPPNVQVSNIRRSQPKDPRGHLSSVASFPQRHQSAVSQQQQLGSFESEVSDKTEKHPQAEATLAAETSQQPTTSSLLAAVMKSGIFSNNSITSSVPNLSFLDTKNLPSQLGAQPPQPVGSSTSLISSGLEVASPSSLGPSPNDESSTLPNISQGKVGQPPRPPPQRPAPSFVSSASAQTSNVTHSTSNPISNLLSSLVAKGLISAKTRSVPAGMQTQLEDQSQNITTSNSLPVASIPGPAATPASSTGDDLDHDAKSSVAISQSTATEIRNLIGFEFKPDVIRELHPDVIRDLLDDLPHHCSACGLRLKHQEQFNRHLEWHATREGEQNGLIKASRGWYAKSSDWIGINEAEFPSECEHTDSLDINVKTRDNIEHDEMVPRDENQCLCVLCGEIFEDVYCQERDEWMFKGAAYMTISDSDGEMGSGPIIHAKCLSRSSISSVAEMEHD 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02085 1046 MobiDBLite consensus disorder prediction 815 833 - -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 549 566 - -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 54 76 - -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 624 645 - -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 207 236 - -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 815 853 - -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 588 670 - -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 588 611 - -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 207 228 - -
Bva13g02085 1046 ProSitePatterns Zinc finger C2H2 type domain signature. 899 919 IPR013087 -
Bva13g02085 1046 Gene3D - 73 203 IPR008942 -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 728 787 - -
Bva13g02085 1046 SUPERFAMILY ENTH/VHS domain 80 204 IPR008942 -
Bva13g02085 1046 ProSiteProfiles CID domain profile. 78 206 IPR006569 -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 510 533 - -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 1 35 - -
Bva13g02085 1046 SMART 558neu5 81 203 IPR006569 -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 728 752 - -
Bva13g02085 1046 CDD CID_Pcf11 83 195 - -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 768 787 - -
Bva13g02085 1046 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1042 - -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 549 572 - -
Bva13g02085 1046 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1042 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Bva13g02085 1046 Pfam CID domain 87 192 IPR006569 -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 1 29 - -
Bva13g02085 1046 MobiDBLite consensus disorder prediction 507 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02085 Bva-Chr13 16520136 16527572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02085 54 418 C2H2 Transcription Factor Family AT4G04885 40.541 1.64e-56 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02085 K14400 - gmx:100788958 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02468 04 22489766 22497060 Bva13g02085 13 16520136 16527572 BWGD
Bva13g02085 13 16520136 16527572 Bva13g02085 13 16520136 16527572 ECH