Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02084 ATGAACCCAAACGACCAAGGTAATCCAAAAACGCCAACAAGATCTTCTCGGAAAGCTCCGGCTGGTTCTTCGTCCTCGCCCCGGTTGGAGCAGGGGACAATTGGATTTTCCACTACTAAGCTTGAGATGTCAGAATCTTTATTGGATTCTCAATCATTTGCTTTAGCTCCAAATTTGGGAGATGCCTCAGCAAGTCTTTCCATGGCCGACATTGGCCTTTCGGGgcctcttccttcttctcctttGATGGACTTCGAAGCATTTTCAACTATGAACCCGGTGTCTTCCACTGAATTACTTGCAACAAGCGTTGAGTTGGAGAACGTCCGCGTGCCTCAGTCGCTTGAGTCTTTACAGGGGAATCCAGTTCCACCATTTCTATCGAAGACTTTCGATCTCGTCGATGACCCATCGCTGGATCCGATTATATCATGGAGCTCGACAGGTGGGAGTTTCGTTGTATGGGACCCTATGGAGTTTGCAAGGTTAATCTTGCCACGGAATTTCAAGCACAACAATTTATCCAGTTTTGTTCGCCAGCTAAATACTTATGGGTTCCGCAAGATTGATACTGATAAATGGGAGTTTGCTAATGAAGCTTTCCAGCGAGGGAAGAAACATCTATTGAAGAACATCCAAAGGCGCAGGTCACCTCAAGCCCAGCAGGTTGGTAGCTATATTGGGCCATTTACTGAAGCAGGGAAGCCTGGAGTTCAGGTTGAGGTGGAAAGACTGAGAAAAGAGAGGGGTACGTTAATGCGTGAGATGGTTGATTTGCAGCAACAGCAGCGAAGGACAGTTCATCATATAGGAGAAGTGAACCAAAGGCTCCAGTCTGCAGAGCAGAGACAAAAACAAATGATGTCTTTCTTGGCCAAGTTATTTCAAAACCCAGCTTTTTTAGCCCGACTTCAGCAAAAGAAGGAACAGAGAGATTCAGGTGAGACTAGAGCGAGGAGAAAGTTTATCAAGCAGCACCAACATAACGCAGGAACATCGGATTTTTTGAGGGAAGGGCAGATTGTAAAATACCAACCCGATTGCAGAAATATATCCTTATCTTCTGAAACACCAGAACTGAATCCAGTTTCTACTGAAAAGTCTCCTGAATACCTTTCACAGGGTTTGGCAGGAGAACTGTGTTCAGGCACAGAAAATCTGAGTTTGCCATTTGAGAACGTTGCATCAGATGAAATGGCTGTAACCCATGAGATGATGGCAATGCAAGAGATAGTAGGAGAATGGTCATCAAGCTTAGGACTTGAAGATCCCCTTTTCAAAGGAGAAAACATCATGAGCCCAGAACAAGAAGTTATTCCACAGTATTTTGCCTCTTTCCCAGAGAATTTGGCCAAGGAGGATGCCTTTCCAGAGTTTCCCCTTTCTGGAACTGAAAGCATCATCAAACAAGAAGATATATGGAATCCCGCCTGTAGTGGCAGTGGTGCTGCTTCTGTCTCTGGGAATGAGCTATGGAGAAATCCAATCAATTATGAGGTGCCAGAATTTGGAGCGACAGGCGGTATGTCAGACATCTGGGATATGAGCTCTTTGCAAGTTACTGGAAGTTTGGGTATTGACAAGTGGCTAACTGATGATTCCCCTCCTGAAGAAACAGAAAGTTA 1625 0.4449 MNPNDQGNPKTPTRSSRKAPAGSSSSPRLEQGTIGFSTTKLEMSESLLDSQSFALAPNLGDASASLSMADIGLSGPLPSSPLMDFEAFSTMNPVSSTELLATSVELENVRVPQSLESLQGNPVPPFLSKTFDLVDDPSLDPIISWSSTGGSFVVWDPMEFARLILPRNFKHNNLSSFVRQLNTYGFRKIDTDKWEFANEAFQRGKKHLLKNIQRRRSPQAQQVGSYIGPFTEAGKPGVQVEVERLRKERGTLMREMVDLQQQQRRTVHHIGEVNQRLQSAEQRQKQMMSFLAKLFQNPAFLARLQQKKEQRDSGETRARRKFIKQHQHNAGTSDFLREGQIVKYQPDCRNISLSSETPELNPVSTEKSPEYLSQGLAGELCSGTENLSLPFENVASDEMAVTHEMMAMQEIVGEWSSSLGLEDPLFKGENIMSPEQEVIPQYFASFPENLAKEDAFPEFPLSGTESIIKQEDIWNPACSGSGAASVSGNELWRNPINYEVPEFGATGGMSDIWDMSSLQVTGSLGIDKWLTDDSPPEETES 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02084 541 Coils Coil 242 262 - -
Bva13g02084 541 PRINTS Heat shock factor (HSF) domain signature 177 189 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g02084 541 PRINTS Heat shock factor (HSF) domain signature 164 176 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g02084 541 PRINTS Heat shock factor (HSF) domain signature 126 149 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g02084 541 SMART hsfneu3 122 215 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g02084 541 Pfam HSF-type DNA-binding 126 215 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g02084 541 MobiDBLite consensus disorder prediction 1 32 - -
Bva13g02084 541 SUPERFAMILY "Winged helix" DNA-binding domain 121 215 IPR036390 -
Bva13g02084 541 Gene3D - 119 216 IPR036388 -
Bva13g02084 541 ProSitePatterns HSF-type DNA-binding domain signature. 165 189 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva13g02084 541 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 110 537 IPR027725 -
Bva13g02084 541 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 110 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02084 Bva-Chr13 16515949 16518841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02084 111 521 HSF AT5G03720 45.412 8.34e-105 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva13g02084 HSF_DNA-bind 2.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02084 K09419 - gmx:100780835 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02084 13 16515949 16518841 Bva13g02084 13 16515949 16518841 ECH