Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02064 ATGGATTGGAATGGGAGCACAAGACCCTTTGTTCCTCGAGCAGAGTCTTCCTTAAGCTTCCTTTATAACTATAACTACAACCCATATCCAGggATGGAAGTGAAACATTCAGCATTTGCAGAGACACCACAAGGGTTGCTTCAGTCAGTGGACAAATTGAACTACGGAAACCAGGAGAAGAAGAAGCGATTAACAGTAGATCAACTTGACTCGCTGGAGAGGAGTTTCCAGGAGGAGATAAAGTTGGACCCGGATAGGAAGATGAAGCTGTCCAGGGAGCTGGGGCTGCAGCCACGCCAAATTGCAGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGGCTAAGCAGCTGGAGAACTTGTACGATACACTCAAACAGGAATTCGATGTCATCTCCAAGGAAAACAAGAAGCTTCAAGAAGAGGTAATGAAGTTGAGGGCTGTGGTGAGAGAGCAAGCTTGTAGAACGAAAGCATCTGCAGGTTATACTGAAATCTCTGGGGAAGAAACAGTAGAAAGCACGTCAGAGGCCATCCTTAGATCTAACAAGCAGATTGCGGATGGCAAGTATTCTCTCACTGTGGATGATTATAACACTGTTTCACTGCCCTACTGGGCTGCTGTGCCTCATTATCCCTA 638 0.4608 MDWNGSTRPFVPRAESSLSFLYNYNYNPYPGMEVKHSAFAETPQGLLQSVDKLNYGNQEKKKRLTVDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLENLYDTLKQEFDVISKENKKLQEEVMKLRAVVREQACRTKASAGYTEISGEETVESTSEAILRSNKQIADGKYSLTVDDYNTVSLPYWAAVPHYP 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02064 212 Pfam Homeodomain 60 113 IPR001356 GO:0003677
Bva13g02064 212 Coils Coil 107 155 - -
Bva13g02064 212 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 203 - -
Bva13g02064 212 SUPERFAMILY Homeodomain-like 50 117 IPR009057 -
Bva13g02064 212 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Bva13g02064 212 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Bva13g02064 212 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Bva13g02064 212 Gene3D - 51 125 - -
Bva13g02064 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 203 IPR045224 GO:0003700
Bva13g02064 212 CDD homeodomain 60 116 IPR001356 GO:0003677
Bva13g02064 212 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Bva13g02064 212 Pfam Homeobox associated leucine zipper 115 148 IPR003106 GO:0006355|GO:0043565
Bva13g02064 212 SMART HOX_1 58 119 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02064 Bva-Chr13 16384208 16385893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02064 3 159 Homeobox Transcription Factor Family AT2G36610 45.000 3.13e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva13g02064 Homeodomain 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02064 - - rcu:8274879 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02490 04 22613039 22615882 Bva13g02064 13 16384208 16385893 BWGD
Bva13g02064 13 16384208 16385893 Bva13g02064 13 16384208 16385893 ECH