Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02054 ATGATTATTCAACCAAACATAACAGTCCGCTTCCATTTctgctatttctttttccttttcctttcccaCACTTCTTCTCAACTCACATGCCCAAATTGTGGTTCTATGCAAGTTCCATACCCTCTAAGCACACACCCTAGTTGTGGTGATCCAGAATATAGTCTTCGGTGTGATTCTCAGTCTCGGAAGCTTTACCTTGATGCCCTCAATGGAAGCTCCTATCTTGTAGTAAGAATCATGCCATCAATCCAACGCATGGTGATACAGCCATCACCTTGGTTACCTGGCACGTGTATTTCTCAAGACTTGCGAGTAAGTGAGGGCCTTTGGCTAAATCAGTCACTTCCTTTCAACATAACATCCTCAAACACAGTCTTCCTCTTTAACTGTTCCCCTCGCCTCTTGGTTTCTCCTCTCAATTGCACGCCTTCTAGCCTTTGTCACCGCTACTTGGAGAGCTCAGGTCATGTTGACCAAAAACGAGCACATCAGTGTGCAAGTGATCTTAACCCTTGTTGCACCTTCGTTACCGGTGGCGTGCCTTCAACTTACAAGATACGGCTTCACAATTCTGGTTGCAAAGCATTCAGAAGCATCCTTTATTTGGATACAGAGAAGCCTGCTGAGCAGTGGGAAGAGGGCCTTGAAATTCAATGGAGTCCTCCACCTGAACCAGTTTGCAGGACACAACAAGACTGTCCAGAAGACTCTAAGTGCTCTCCTGCTGGTAGAAATAGCCTTTTTCGCTGTCTTTGTAACGAGGGACACCACTGGGACCCTGTTGTTGCAAACTGCttgagaaataagaaaaaatctaaGTCCCAGATCAGCTTGGTGATCACAGTAGGGGTTGTCGCTTTTTTCTGCGTAActgtaattattgccatcaTCACAAGGAGGTCTTGTATGCTCTTTAACCGTGCAAAACAGGCCAAAGCAAGAGAACATGTGCTGAAATCAAGCAATGGCGAGAAACCTGCTCGAATGTTTCGActgaaagaaatgaaggagGCAACAAATAGTTTTTCTAAAGACAGGATTCTGGGAAGTGGTGGCTTCGGGGAAGTTTACAAAGGAGAACTTGAAGATGGAACTGTGGTGGCTGTGAAGAGGGCTAGAGTGGGCAACCTGAAAAGCACCGAACAAGTACTTAATGAAGTTGCAATACTGTCTCAAATCAATCACAGGAACCTAGTCAGACTCTTTGGTTGCTGTGTGGAATCCGAGCAGCCATTGATGATTTACGAGTACATCTCCAATGGGACTCTCCATGACCATCTTCATGGTAGGTATCCCAACTTACTAGACTGGAAAACGAGACTGAAGATTGCTTTTCAAACAGCTGAAGCATTGGCTTATTTACATTCTTCTACACACACTCCCATCTACCACAGAGATGTCAAGTCAACAAATATACTATTAGATGATGAATTTAACGCCAAAGTTGCAGACTTTGGGCTATCCAGACTGGCTAACCCAGGACTGAGTCATGTGTCAACCTTTGCTCAGGGAACAATGGGGTACTTAGATCCTGAATACTATCGCAACTACCAATTAAGTGATAAAAGTGATGTTTATAGTTATGGAGTTGTGATGCTAGAACTTTTGACTTCTCAAAAGGCCATAGATTTCTGTCGTGATCAAGATGATGTTAATCTAGCAATCTATGTGAGCCAACATGCCAGCAATGACACAATCATGGAACTGGTGGATCAAAGGCTTATGGAGCTCTCTGTGTCTGGTGATAAATTAATCACAAGCATAAAATTCTTCTCTGATCTTGCACTTAACTGTATCAAGGAGAAGAAAGCTGAGAGGCCTTGTATGAAGGATATTGTTCAACAACTTCAATGCATAATTAGGATTCTAGATcaata 1877 0.4156 MIIQPNITVRFHFCYFFFLFLSHTSSQLTCPNCGSMQVPYPLSTHPSCGDPEYSLRCDSQSRKLYLDALNGSSYLVVRIMPSIQRMVIQPSPWLPGTCISQDLRVSEGLWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTPSSLCHRYLESSGHVDQKRAHQCASDLNPCCTFVTGGVPSTYKIRLHNSGCKAFRSILYLDTEKPAEQWEEGLEIQWSPPPEPVCRTQQDCPEDSKCSPAGRNSLFRCLCNEGHHWDPVVANCLRNKKKSKSQISLVITVGVVAFFCVTVIIAIITRRSCMLFNRAKQAKAREHVLKSSNGEKPARMFRLKEMKEATNSFSKDRILGSGGFGEVYKGELEDGTVVAVKRARVGNLKSTEQVLNEVAILSQINHRNLVRLFGCCVESEQPLMIYEYISNGTLHDHLHGRYPNLLDWKTRLKIAFQTAEALAYLHSSTHTPIYHRDVKSTNILLDDEFNAKVADFGLSRLANPGLSHVSTFAQGTMGYLDPEYYRNYQLSDKSDVYSYGVVMLELLTSQKAIDFCRDQDDVNLAIYVSQHASNDTIMELVDQRLMELSVSGDKLITSIKFFSDLALNCIKEKKAERPCMKDIVQQLQCIIRILDQ 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02054 625 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Bva13g02054 625 SUPERFAMILY Protein kinase-like (PK-like) 323 616 IPR011009 -
Bva13g02054 625 Pfam Wall-associated receptor kinase galacturonan-binding 30 87 IPR025287 GO:0030247
Bva13g02054 625 CDD STKc_IRAK 348 617 - -
Bva13g02054 625 ProSiteProfiles Protein kinase domain profile. 342 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g02054 625 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 21 625 - -
Bva13g02054 625 Gene3D Transferase(Phosphotransferase) domain 1 418 623 - -
Bva13g02054 625 SMART serkin_6 342 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g02054 625 Pfam Protein tyrosine and serine/threonine kinase 344 616 IPR001245 GO:0004672|GO:0006468
Bva13g02054 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Bva13g02054 625 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 625 IPR045274 GO:0007166
Bva13g02054 625 Gene3D Phosphorylase Kinase; domain 1 302 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02054 Bva-Chr13 16333645 16336592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02054 30 625 Receptor kinase-like Gene Family AT5G02070 47.115 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Bva13g02054 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02054 - - gmx:100804678 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02054 13 16333645 16336592 Bva13g02054 13 16333645 16336592 ECH