Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02049 ATGGCTGAATCAGTCTCCAGTGCTTCCTCGAACACTACCCCGCCACCACCGGAGAGCAAGCCATCGGCTCCGGTACATAAAAGTTGGGCCGATGAAGCTGAGGAGGACGTTCTTGAAGAAAATAACGGGCCTTCGAGTTCAGCATCAGCCTCATCGCTTAACGTTGATGGATTAGCTATAGGCGAGAACAAGAAGGAAGCTAGGTCTTTGGATGAACCCGACGATTCAAACATCAAAGCAATTACATTTGGTGATACTCCGTATACTTCAGCGAGCACCTTTGAAGATTTAAATCTGTCTCCGGAGCTTCTAAAGGGATTGTATGTTGAGATGAAGTTTCAGAAGCCTAGCAAAATACAAGCTATCAGCTTGCCAATGATATTGAGCCCACCTTTTAAGGATCTGATTGCTCAGGCACACAACGGTTCTGGCAAGACAACATGTTTTGTGCTTGGGATGTTGAGTCGCGTTGATCCTAAGCAGCAGGCTCCTCAAGCTCTTTGCATTTGTCCAACAAGAGAATTGGCTATTCAGAATACTGAAGTCCTTCGGAAGATGGCAAAATACACAGGGATCAGTTCAGAATGTGCCATACCAACCGATAGCCGAGATTCCATTCCAATATCAAAACGGGCCCCCATCATGGCACAAGTAGTGATTGGGACCCCTGGCACTATAAAGAAGTGGATGACATTTAAGAAACTGGGTGTAAGCAGattaaaaattcttgtttttgatGAGGCCGATCAAATGCTTGCTGAGGATGGTTTTAGAGATGATTCCTTGAGGataatgaaagaaatagaaagggTCAATCCTCAGTGTCAGgttcttctcttttctgccACATTCAATGACGTTGTTAAGAATTTTGTCTCAAGGACAGTTAAACCAGACCACAATAAGCTCTTTGTGAGGAGAGAAGAGCTATCTTTAGAGGCAGTGAAGCAATACAAGGTGAACTGTATTGATGAACTCTCTAAGATTGAAGTGATCaaagattatatatttgaaattggaGAGAATGTGGGGCAAACTATTATATTTGTGCGTACAAGAAATAGTGCAAGGATGTTGCATAAATCACTTGTTGATATGGGCTACGCGGTTACTTCCATACAAGGAGCTCTTGAACATGTTGAGAGAGACAAGATAGTCAAGGAGTTCAGGGATGGTTTGACTCAAGTTCTTATATCAACGGATGTTCTTGCTCGAGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAATTATGATCTTCCATTGAAACATACTGCTGAATATACCCGGGAACCTGAGCCCGATTATGAGGTTTATTTGCACAGGGTTGGTAGGGCTGGACGTTTTGGTCGCAAGGGAGCTGTATTTAACCTGATATGTGGTGATAGGGATGTAATGCTCATGCAGAAGATAGAAAAGCATTTTGGCACCGAAGTAATTGAGGTCCCAGAAAATAGTGTTGAAGCCTATAAAGCCGCATTGAAGGAGGCTGGCTTACTTCAATG 1505 0.4153 MAESVSSASSNTTPPPPESKPSAPVHKSWADEAEEDVLEENNGPSSSASASSLNVDGLAIGENKKEARSLDEPDDSNIKAITFGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILSPPFKDLIAQAHNGSGKTTCFVLGMLSRVDPKQQAPQALCICPTRELAIQNTEVLRKMAKYTGISSECAIPTDSRDSIPISKRAPIMAQVVIGTPGTIKKWMTFKKLGVSRLKILVFDEADQMLAEDGFRDDSLRIMKEIERVNPQCQVLLFSATFNDVVKNFVSRTVKPDHNKLFVRREELSLEAVKQYKVNCIDELSKIEVIKDYIFEIGENVGQTIIFVRTRNSARMLHKSLVDMGYAVTSIQGALEHVERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPLKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLICGDRDVMLMQKIEKHFGTEVIEVPENSVEAYKAALKEAGLLQ 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02049 501 Gene3D - 310 490 IPR027417 -
Bva13g02049 501 MobiDBLite consensus disorder prediction 40 56 - -
Bva13g02049 501 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 490 IPR001650 -
Bva13g02049 501 SMART ultradead3 112 318 IPR014001 -
Bva13g02049 501 MobiDBLite consensus disorder prediction 1 57 - -
Bva13g02049 501 SMART helicmild6 357 450 IPR001650 -
Bva13g02049 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 469 IPR027417 -
Bva13g02049 501 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 302 IPR014001 -
Bva13g02049 501 Pfam DEAD/DEAH box helicase 118 290 IPR011545 GO:0003676|GO:0005524
Bva13g02049 501 PANTHER DEAD-BOX HELICASE DBP80 71 481 - -
Bva13g02049 501 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 121 IPR014014 GO:0003724
Bva13g02049 501 Pfam Helicase conserved C-terminal domain 328 450 IPR001650 -
Bva13g02049 501 Gene3D - 76 309 IPR027417 -
Bva13g02049 501 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 71 481 - -
Bva13g02049 501 CDD DEADc_DDX19_DDX25 99 303 - -
Bva13g02049 501 CDD SF2_C_DEAD 315 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02049 Bva-Chr13 16290058 16293843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02049 85 485 Eukaryotic Initiation Factors Gene Family AT1G72730 35.593 4.52e-69 225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02049 13 16290058 16293843 Bva13g02049 13 16290058 16293843 ECH