Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02023 ATGGATCGAGAATGGGGTTCAAAGCCCGGCAGTGGAGGCGCCGCCTCCGCCCAAAACGAGGCCATCGACCGTCGAGAACGTCTCCGTCGACTCGCTTTGGAGACTATAGATCTTGCTAAAGACCCCTATTTTATGCGCAACCACCTTGGCAGCTATGAGTGCAAGCTTTGCCTCACTTTACATAATAATGAGGGAAATTACTTGGCACACACACAGGGCAAGCGCCACCAGACTAATTTGGCTAAGAGAGCAGCTCGCGAGGCCAAAGAGGCTCCGGCTCAACCTCAGCCCCATAAGCGCAAAGTTTCCCTTCGCAAGTCAGTCAAGATTGGTAGGCCTGGTTACCGAGTGACTAAACAATATGATCCAGAGACAAAACAGAGATCTCTTCTTTTCCAGATTGAATATCCTGAGATTGAAGACCTCACAAAGCCAAGGCACAGATTCATGTCTTCTTATGAGCAGAGAGTGCAACCCTTTGATAAAAGATATCAGTATCTATTGTTTGCCGCTGAACCATATGAGATCATTGCTTTTAAGGTTCCTAGCACAGAGATTGACAAGTCCACTCCCAAGTTTTTCTCACACTGGGATCCAGATTCAAAGATGTTCACgTTGCAGTTATATTTCAAATCCAAGCCACCAGAGGCAAACAAACCACAGCCTCCCCCTACGGCTAATGGTACAACTGCACCTGGTGTCCCCCCAAGGCCTTTGCCTCCCCCACCCCAAGCTCCGCCACCACCCCCACCTCCACCACAAGGGTTACCTCCTGTTGGAAATCCTCCTAGAGTGCCTCCGCCTCCAATCCCCGGATCATTGCTGCCGCCGCCACCTCCTATGGCAAATGGCCCTAGGTCTGTCCCCCCACCCCTTGTTGCCACCGGCACAACAGCAAATTTTAGCATGGGCACAAGGCCTCCAATGCCACCTCCACAAGGTTTTCCTGCCCAACAAATGCAGGGCCACCCTATTCGTccacctccaccaccacctaGCATGGGATA 1007 0.5035 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSLRKSVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEANKPQPPPTANGTTAPGVPPRPLPPPPQAPPPPPPPPQGLPPVGNPPRVPPPPIPGSLLPPPPPMANGPRSVPPPLVATGTTANFSMGTRPPMPPPQGFPAQQMQGHPIRPPPPPPSMG 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02023 335 MobiDBLite consensus disorder prediction 213 335 - -
Bva13g02023 335 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 327 - -
Bva13g02023 335 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Bva13g02023 335 MobiDBLite consensus disorder prediction 305 335 - -
Bva13g02023 335 Pfam Zinc-finger of C2H2 type 52 76 - -
Bva13g02023 335 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Bva13g02023 335 Gene3D - 94 218 - -
Bva13g02023 335 SMART CactinC_cactus_3 89 217 - -
Bva13g02023 335 MobiDBLite consensus disorder prediction 216 287 - -
Bva13g02023 335 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Bva13g02023 335 MobiDBLite consensus disorder prediction 1 21 - -
Bva13g02023 335 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Bva13g02023 335 Gene3D Classic Zinc Finger 46 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02023 Bva-Chr13 16146563 16149094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02023 1 228 C2H2 Transcription Factor Family AT2G32600 88.596 2.75e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02023 K12826 - pvy:116139341 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02023 13 16146563 16149094 Bva13g02023 13 16146563 16149094 ECH