Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02018 ATGGAAGGCCAAGTGCTACAGGAACTTGTGGTGATCAAGGGCAGGCGCACCAAGCGTCAAAGGCTTCCCTCTCCGCTCCGTTTGGCcatggcttcgtcaacttccGCCGGAAGAGTCAGCACTGACCACTCATCAACTTCATCGCTGGACAGCACGCAAGAAGAAGAGGACATGGACATGGCTAATTGTTTGATTCTTCTCGCTCAAGGGCATTCCGGTAAAGTCTCTTCGTCACCTGAACCCGCTAACGTTGCTCAACCTCACAATAACTACGTGTACCAGTGCAAGACCTGTAACCGTTGCTTCCCTTCATTCCAAGCCCTCGGTGGACACAGAGCCAGCCACAAGAAACCCAAGCCAAATAGCACAGAAGAAAAGCAAGCTGTTACCTTTCTCGTTAACGAAAAGGATCATGATCTTTATGACCACGCCACCGCCACAAGCACCGCTCTCTCTTTGCAATTATCAAATGGGGCTTTGTATACTTCCAATAATAAACCCAAAGTTCATGATTGTTCCATTTGTGGCGCTGAGTTTTCTTCTGGGCAAGCCTTGGGGGGTCATATGAGGAGGCACAGAACTTTCATCAATACGTCTACGGCAACAACATCTTCGAGTGAAGGCAAGAAACCCAGAAATGTTTTGAAGTTGGACTTGAATCTTCCCGCACCGGAGGATGATAATTTGAAGAGGGAATCCAAGTTTCCATTTCaatccaaagaaaaagttcTTGTCTTCTCTGCGTCTTCTCTCGTCGATTGCCATTACTA 770 0.4571 MEGQVLQELVVIKGRRTKRQRLPSPLRLAMASSTSAGRVSTDHSSTSSLDSTQEEEDMDMANCLILLAQGHSGKVSSSPEPANVAQPHNNYVYQCKTCNRCFPSFQALGGHRASHKKPKPNSTEEKQAVTFLVNEKDHDLYDHATATSTALSLQLSNGALYTSNNKPKVHDCSICGAEFSSGQALGGHMRRHRTFINTSTATTSSSEGKKPRNVLKLDLNLPAPEDDNLKRESKFPFQSKEKVLVFSASSLVDCHY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02018 256 MobiDBLite consensus disorder prediction 21 55 - -
Bva13g02018 256 Pfam C2H2-type zinc finger 169 193 - -
Bva13g02018 256 Pfam C2H2-type zinc finger 92 118 - -
Bva13g02018 256 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Bva13g02018 256 PANTHER ZINC FINGER PROTEIN ZAT5 10 255 - -
Bva13g02018 256 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 10 255 - -
Bva13g02018 256 ProSitePatterns Zinc finger C2H2 type domain signature. 172 192 IPR013087 -
Bva13g02018 256 Gene3D Classic Zinc Finger 91 192 - -
Bva13g02018 256 SUPERFAMILY beta-beta-alpha zinc fingers 92 192 IPR036236 -
Bva13g02018 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 192 IPR013087 -
Bva13g02018 256 MobiDBLite consensus disorder prediction 27 48 - -
Bva13g02018 256 SMART c2h2final6 170 192 IPR013087 -
Bva13g02018 256 SMART c2h2final6 93 115 IPR013087 -
Bva13g02018 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02018 Bva-Chr13 16131958 16132975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02018 9 256 C2H2 Transcription Factor Family AT5G03510 42.857 4.47e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva13g02018 zf-C2H2_6 2.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02018 - - vvi:100252049 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00159 04 990040 991216 Bva13g02018 13 16131958 16132975 BWGD
Bva13g02018 13 16131958 16132975 Bva03g02233 03 19492628 19494113 ECH
Bva13g02018 13 16131958 16132975 Bva09g00307 09 1600802 1602548 ECH
Bva13g02018 13 16131958 16132975 Bva13g02018 13 16131958 16132975 ECH
Bva13g02018 13 16131958 16132975 Bva07g02339 07 19124700 19125987 ECH