Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02016 ATGGATTCCCGGATGTCAATCGGTGTAGTTTCTCTTCAGGACCACGAGTCTCCATCCCAACTGGGATATGCCAAATACGggtGCTCACATTATAAGAGGAGATGCAAGATCAGAGCACCTTGCTGCAATGAAATTTTCGACTGCAGACATTGCCATAATGAATCAAAGAACTCGATTGAATTGGACCCTGTTGATCGCCATGACATTCCTCGTCATGATTTGAAGCGAGTACGTAGCCATAATATCTGTTGGTTACTTGTTTCCAGTTTCCAACGTGTGGCATCATATGGTTCACTAAAGATCATCTGTTCCCTGTGTAGCACAGAGCAAGATGTTCAACAGATGTGCATTAACTGTGGTGTTTGCATGGGAAATTACTTCTGCTTCAAGTGCAAGTTTTTTGATGATGATGTATCAAAAAAGCAATATCATTGCGATGAGTGTGGAATCTGCAGAACTGGAGGAGAGGAGAACTTTTTCCATTGCAATAAATGTGGCTGTTGCTATTCAAAGTTGATGAAGGATTCACACCAATGTGTGGAAAAAGCAATGCATCATAATTGTCCTGTTTGCTTTGAGTTTCTTTTCGATACGACAAAGGACATTACTGTATTGCCATGCGGTCACACTATCCATTTGGGATGTGTGACAGAAATGGAGCGGCATTATCAgtATGCATGCCCTGTGTGCTCAAAATCATTTTGTGATATGTCGCGTGTGTGGGAAAGATTGGATCAGGAGGTTGCATCAACTCCTATGCCTGAAATATATCAGAGTAAGATGGTTTGGATTCTCTGCAATGACTGTGGGGAAACATCCGAGGTAAGCTTTCATATTGTGGCGCACAAGTGCAACAAATGCAAATCCTACAATACAAGACAGACACGAGGTGGGTCTGCATCATGCTCGTCAAGGATTGAAGAGATGGTGAGATG 935 0.4225 MDSRMSIGVVSLQDHESPSQLGYAKYGCSHYKRRCKIRAPCCNEIFDCRHCHNESKNSIELDPVDRHDIPRHDLKRIICSLCSTEQDVQQMCINCGVCMGNYFCFKCKFFDDDVSKKQYHCDECGICRTGGEENFFHCNKCGCCYSKLMKDSHQCVEKAMHHNCPVCFEFLFDTTKDITVLPCGHTIHLGCVTEMERHYQYACPVCSKSFCDMSRVWERLDQEVASTPMPEIYQSKMVWILCNDCGETSEVSFHIVAHKCNKCKSYNTRQTRGGSASCSSRIEEMVR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02016 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 1 286 - -
Bva13g02016 287 SUPERFAMILY RING/U-box 161 213 - -
Bva13g02016 287 SUPERFAMILY CHY zinc finger-like 25 99 IPR037274 GO:0008270
Bva13g02016 287 ProSiteProfiles Zinc finger CTCHY-type profile. 99 163 IPR017921 -
Bva13g02016 287 Gene3D - 235 280 - -
Bva13g02016 287 Pfam CHY zinc finger 28 109 IPR008913 GO:0008270
Bva13g02016 287 Pfam Zinc-ribbon 211 269 IPR039512 -
Bva13g02016 287 SMART ring_2 164 206 IPR001841 -
Bva13g02016 287 ProSiteProfiles Zinc finger CHY-type profile. 21 97 IPR008913 GO:0008270
Bva13g02016 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 227 IPR013083 -
Bva13g02016 287 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 286 - -
Bva13g02016 287 Pfam Ring finger domain 163 206 IPR001841 -
Bva13g02016 287 SUPERFAMILY Zinc hairpin stack 100 157 IPR037275 -
Bva13g02016 287 ProSiteProfiles Zinc finger RING-type profile. 164 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02016 Bva-Chr13 16116043 16118641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02016 26 269 C2H2 Transcription Factor Family AT3G18290 39.759 4.45e-52 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02016 13 16116043 16118641 Bva13g02016 13 16116043 16118641 ECH