Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02013 ATGCTCCAAATAACCtgcattttccttctctctcttgtgGGTTCATTCTTGCCCCTTGGAACGGCAATGCTGAACCTCACTCTCCCCGGTCAGCACCCACACCCAGAAGCTGTTGTCCACGAAGTTCATAGGAAAGTGAATGCTTCAATTGCAAGAAGGAAAATGCTGCAAGAATCAATGAAAGACGAGTCGTCGTGCCTAACAGGGAACCCCGTCGACGATTGCTGGAAATGTGACCCAAATTGGGCAAACAACAGACAGAGGCTAGCTGATTGCGCAATTGGGTTCGGGCAGTACGCAAAGGGTGGCAAAGATGGCAAATTTTACATTGTCACAGACGACTCAGACGACGACGCCGTTAACCCAAAACCTGGCACACTCCGATACGCAGTGATACAGGACGAGCCTCTGTGGATAGTGTTCCCAAGTAACATGATGATTAAGCTCTCCCAAGAACTCATCTTTAATAGCTACAAGACCATTGATGGGCGCGGTGCCGATGTGCACATTGTTGGCGGTGGCTGCATCACTCTCCAGTATATAAGCAATGTCATCATACACAACGTTCACATCCACCATTGTCATCCCTCCGGTAATACTAACGTACGGTCGAGTCCAGCGCATTACGGGTATCGGACAGAATCAGACGGTGATGGGATATCGATATTCGGGTCGAAAGACATATGGATCGACCATTGCACACTGTCTCGGTGCAAAGACGGGTTGATAGACGCGGTTATGGGGTCGACGGGCATAACCATCTCCAACAACTTCTTCTCACATCACAACGAGGTCATGTTGCTGGGCCACAGCGATGATTACCTCCCCGACTCGGGTATGCAGGTCACCATCGCCTTCAACCATTTCGGGGAGAAGCTGGTGCAAAGAATGCCACGGTGCCGACGTGGCTACATCCACGTGGTCAACAACGAATACACCCATTGGGAGATGTATGCCATCGGGGGTAGCGGTAACCCCACCATCAACAGCCAAGGGAATCGCTATATGGCGCCGGTGAATCCCTACGCGAAGGAGGTGACCAAGAGGTTGGACACGGGAGACGGGGAATGGAGGGATTGGAATTGGAGATCGGAGGGGGACATTATGGTAAATGGAGCGTTCTTCGTGGCCTCAGGGGAAGGGGTTGAGGTTAAATACGAGAAGGCCTACAGCGTGGAGCCCAAGTCTGCAGATCATATCGATTTGCTCATCATGAACGCCGGGGTTCTCGGCAATGCCAGGGACAACAACCTGGGCATGTGGAGTAGGGGACCCAACAGCGGTGGCGGCGAAGGTGAAATAACAGTGTCAGACGGCCCAGAATACACTGATGATATGTCCTTGACCACAAGGCTGCTTCCACCTTCGTATATTGTCTCCTCTTTTATTGGATTGTTATTGTTATGCTTATTGTCCTCTAATATGCCCCTAACAAACGAGGAATG 1445 0.5024 MLQITCIFLLSLVGSFLPLGTAMLNLTLPGQHPHPEAVVHEVHRKVNASIARRKMLQESMKDESSCLTGNPVDDCWKCDPNWANNRQRLADCAIGFGQYAKGGKDGKFYIVTDDSDDDAVNPKPGTLRYAVIQDEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNVHIHHCHPSGNTNVRSSPAHYGYRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNEYTHWEMYAIGGSGNPTINSQGNRYMAPVNPYAKEVTKRLDTGDGEWRDWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSVEPKSADHIDLLIMNAGVLGNARDNNLGMWSRGPNSGGGEGEITVSDGPEYTDDMSLTTRLLPPSYIVSSFIGLLLLCLLSSNMPLTNEE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02013 481 Pfam Pectate lyase 153 333 IPR002022 -
Bva13g02013 481 PANTHER PECTATE LYASE 18-RELATED 1 427 IPR045032 GO:0030570
Bva13g02013 481 SMART amb_all 144 341 IPR002022 -
Bva13g02013 481 PANTHER PECTATE LYASE 12-RELATED 1 427 - -
Bva13g02013 481 SUPERFAMILY Pectin lyase-like 65 397 IPR011050 -
Bva13g02013 481 Gene3D - 69 411 IPR012334 -
Bva13g02013 481 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Bva13g02013 481 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Bva13g02013 481 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Bva13g02013 481 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Bva13g02013 481 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Bva13g02013 481 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Bva13g02013 481 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Bva13g02013 481 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02013 Bva-Chr13 16102413 16105682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02013 1 447 Polysaccharide Lyase AT3G53190 74.614 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02013 K01728 - gmx:100775595 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00164 04 1028263 1032740 Bva13g02013 13 16102413 16105682 BWGD
Bva13g02013 13 16102413 16105682 Bva13g02013 13 16102413 16105682 ECH