Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g02012 ATGCAAGGAGAGCAATTGCGCAAAGGGCCTTGGCTTCAAGAGGAAGATGAACAACTCATTTTCTTCGTTACCCGTCTTGGGGAACGACGCTGGGATTCTCTCGCCAAAGTAACTGGGCTCAGGAGAAGTGGTAAGAGTTGcaggttaaggtggatgaacTATCTTCGTCCTAATCTTAAGCATGGTCCTTTCAGTGCTGAAGAAGAGAggttaatttttcaacttcaGCAGCAATGGGGTAACAAGTGGTCAAAGATTGCACGTTGTCTGCCTGGAAGAACTGACAATGAAATCAAGAATTACTGGAGAAcccatttaaaaaagaagacacAAGCTCAACAAGAAGGTGGGGTACAATATAAAGTAGACAACGCTAGAACAGATGAGAAAAGCAGTGAATTGGTTTCACAGGATTACAACTATTCTGACTCTTACCGTCCAGAAACATACACTTTTCCCTTATCAGACTGGGAATTGACAAGCTCACCTCATGAAATCTGGATTTCGGATTGGATAGAAGAATTGCAAACAGATCAAACTGAGACAGAACATCAACATATTGAACAGGACAGCAATAGCAGTTGCACAGAGTCATCCTATGACTCTTATAATCGTATGCGGTTTGGAAATAACTACGATACATGGGATTATGCAGTTGCAGGCTCCCTCTGGGACATGAATTA 683 0.3924 MQGEQLRKGPWLQEEDEQLIFFVTRLGERRWDSLAKVTGLRRSGKSCRLRWMNYLRPNLKHGPFSAEEERLIFQLQQQWGNKWSKIARCLPGRTDNEIKNYWRTHLKKKTQAQQEGGVQYKVDNARTDEKSSELVSQDYNYSDSYRPETYTFPLSDWELTSSPHEIWISDWIEELQTDQTETEHQHIEQDSNSSCTESSYDSYNRMRFGNNYDTWDYAVAGSLWDMN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g02012 227 MobiDBLite consensus disorder prediction 179 199 - -
Bva13g02012 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Bva13g02012 227 Gene3D - 63 125 - -
Bva13g02012 227 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Bva13g02012 227 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Bva13g02012 227 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Bva13g02012 227 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Bva13g02012 227 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Bva13g02012 227 CDD SANT 63 106 IPR001005 -
Bva13g02012 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Bva13g02012 227 Gene3D - 1 61 - -
Bva13g02012 227 CDD SANT 10 55 IPR001005 -
Bva13g02012 227 SMART sant 7 57 IPR001005 -
Bva13g02012 227 SMART sant 60 108 IPR001005 -
Bva13g02012 227 PANTHER MYB TRANSCRIPTION FACTOR 3 227 - -
Bva13g02012 227 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g02012 Bva-Chr13 16100628 16101588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g02012 4 114 MYB Transcription Factor Family AT5G59780 63.063 4.90e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva13g02012 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g02012 K09422 - gmx:100783472 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02012 13 16100628 16101588 Bva13g02012 13 16100628 16101588 ECH