Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01970 ATGGACTGGGACGAATACATGCGGAGGTGTTCCACTAAGAAATGCCAAAGGGTTCAGGTGGATGAATCATTTGTTCCTGCTCTTCAAGATGATGTAATGGAAGTTGAGCATTTACTTGCAGAACCTAGAAATGATCATGTTTCAGTGGATGGtatcttatattttcatgAGGAGAATCTTGGAAAATGCTATGACATTGGAAATCTTTCCTGTGGGTTTGAATTTGgtctaaaaacaaatattgGTGGATTGGGTTCTCCTAAAACTCAGGATGCAAAAGATGATTTGAAACTTGAGGTCCTTGATGGATTGCTGGATGATGTAAAAATTGATGGTCTTCATGCAACAGATGCTTTCTCCGGTGCATATGAAGATTACCTTTTGGCAGATTTTGAATCCGCTGACAAAGCTTGTGGACGAAAATCTGGTCCTTATGGGCAATCAGTGACGGGAAACTCAGGTTCTGAGAGTCATTCTCCAGGATTAAGTGGGAGTAGCATTGGTGTTGGTGGGACATCAGAATCAATAAAACAGCCTATTGCACAATCTGAATGCAGTAATGATTCTCTTGATACGAGAGTAACATGTGACTTGAATGGTGCCTTCAGGAACAATCCCTGTCAACCATCAAATGGAGATCATATGCATCTCAGTCCACTCGATACACAGCATCTAAATGAGTTGGACAATGATCACCCTTCAACGGGTTCTATAGCGTCTCATGAAAATGAGACGGTTTCTGCTGAAGCATGCCACACTGCTGCACTTAGGGAGAAGAGATTTCGCAGGCCTACTCAGAGGtatattgaagaattttcaaatttgaggtcaaaagaaaaagtttccaCTGCTGCAACCAAGAATAAGGAATCGGGTACAAAATTGCATAATGATCTTCATCATATAAGGCTTAGAGCATTGAGAAAGATTCCAGATGGGAAGACTATTTGTGGAACTAGTGATGTGGCATTTCCTGAGTCGAAGATCCACAGCAGACACCTGAAGAAAGAGGAGCTTGAGTATGACGAGGAGCCTTTTGCATCCGAGTCTGAGGACGAATTCGTCACTACAAAAAGATCTAGAAAGAATGACCGTAGGAAGCATCAGAGGATGTGGACTCTCTCTGAAGTAAACAAGTTGGTTGATGGCATTTCTGAATATGGAGTTGGTCGATGGACCGATATAAAGAGGGTTCTGTTTGCTTCTACCAGTTACCGTACCCCCATTGATCTCAGAGACAAGTGGCGGAATCTCTTAAGAGCTAGTTGTGCACAGAAATTTAACAAGAAACAGAGTGAGAAGCAGGAGCCTGCCTTGCGTTCTTTACCCCTTGCTGTACTACGTCGTGTCCGTGAACTGGCTAATATTCACCCCTACCCTAGGGAGCGCTCTTCAAAGAAATCATGCATTGGCCAAGTTGGCTCTTTATCGCTTCCTTCTCAAAGCAGTAGTCATAGCAAAAGAAATGTACGTAGGAATAAGTGTACTTG 1490 0.4121 MDWDEYMRRCSTKKCQRVQVDESFVPALQDDVMEVEHLLAEPRNDHVSVDGILYFHEENLGKCYDIGNLSCGFEFGLKTNIGGLGSPKTQDAKDDLKLEVLDGLLDDVKIDGLHATDAFSGAYEDYLLDFESADKACGRKSGPYGQSVTGNSGSESHSPGLSGSSIGVGGTSESIKQPIAQSECSNDSLDTRVTCDLNGAFRNNPCQPSNGDHMHLSPLDTQHLNELDNDHPSTGSIASHENETVSAEACHTAALREKRFRRPTQRYIEEFSNLRSKEKVSTAATKNKESGTKLHNDLHHIRLRALRKIPDGKTICGTSDVAFPESKIHSRHLKKEELEYDEEPFASESEDEFVTTKRSRKNDRRKHQRMWTLSEVNKLVDGISEYGVGRWTDIKRVLFASTSYRTPIDLRDKWRNLLRASCAQKFNKKQSEKQEPALRSLPLAVLRRVRELANIHPYPRERSSKKSCIGQVGSLSLPSQSSSHSKRNVRRNKCT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01970 495 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 8 492 - -
Bva13g01970 495 Pfam Myb-like DNA-binding domain 371 418 IPR001005 -
Bva13g01970 495 ProSiteProfiles Myb-like domain profile. 363 418 IPR001005 -
Bva13g01970 495 SUPERFAMILY Homeodomain-like 365 435 IPR009057 -
Bva13g01970 495 MobiDBLite consensus disorder prediction 460 495 - -
Bva13g01970 495 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 363 422 IPR017930 -
Bva13g01970 495 SMART sant 367 420 IPR001005 -
Bva13g01970 495 MobiDBLite consensus disorder prediction 144 173 - -
Bva13g01970 495 MobiDBLite consensus disorder prediction 141 173 - -
Bva13g01970 495 MobiDBLite consensus disorder prediction 467 485 - -
Bva13g01970 495 Gene3D - 356 468 - -
Bva13g01970 495 CDD SANT_TRF 369 419 - -
Bva13g01970 495 PANTHER TRF-LIKE 8 8 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01970 Bva-Chr13 15858267 15862187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01970 369 418 Single Myb Histone (SMH) Gene Family AT1G15720 49.057 4.49e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva13g01970 Myb_DNA-binding 6.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01970 - - aprc:113871152 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01970 13 15858267 15862187 Bva13g01970 13 15858267 15862187 ECH