Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01966 ATGATCATGAAACACATTGATATTCAAAGGTGTCTAGAGAAGAAAATGCCAAAGAGAGGGAAGCTGAAGGTAGACAATGGAATGATACTTGCATCAGAACCTGAAAAATTCAACAAGAGTGTAGATCGGAGTTTGGATGGCACTTCCAAAAAGACAAGAATGGATGCTCGCAAGTATAGAGAATTTGCCAGATCACGTCTGAAGAGAGGAAACGTGTCTGAAGAGGAATCCGAGTTTAGATGTAGCTTGGAGCTGACTAAAGATGATGCACAAGTGGATCCTCATATGAGAGATGGTATAGCAGGTGGAGATGGTGTATGTTATGAATGCATGCACGGTGGAGTGCTCTTGCACTGTCATGGAAAAGGGTGTCAAAGGAGATACCATCCCTCTTGTCTGGATCCTCCTCTCAATTATGTCCCTCCCGGGGTTTGGCACTGCCCATGGtgtgtcaaaaagaaaatagagctTGGTGTGTATTCTATTTCACATGGGATAGAATCCATTTGGGACGTTAGGGAGGTGATGGAGAATGAAGTGATGGAACGGCAGTATTTGGTCAAGTATCAGGATCTTGCTCATGCTCACAACCGCTGGATTccagaaaaatatattcttcttgAGGCTCCAAAACGTCTGGCAAAATTTAATCGAAAAGTCGAGGTTATCAGGTGGAAGAGAGAGTGGACAGTGCCTCATCGTTTGCTGCTAAAAAGACTTATAGTATTACCAAAGCAGTATGATGAACATTTTGATGGGCAAGGTGACAAGAGTTCAAATTGCCATTATGAGTGGCTTGTAAAATGGACTGGTCTGGGTTATGATCATATTACGTGGGAGTTAGACGATGCTTCATTTATGACATCTTCCGGAGGCATGAAACTCATAGCAGATTATGAAAGTCGTCATAAGAAGGTAGAAAGACTATCAAATCCTTCTGAAGCTTATGAGCAGGTGAAAGCTTCTTCTGCTGAATTAACAGAGCTGCCAGCTGGAGATTCACCAGGATTACGTGACCACCATTTGAGTTATGTGAACAAGCTTTGCATGTATTGGCACGAAGGTCAGAGTGCTCTTGTTGTTGACGAAAAAGTTGACCAGGAGCGGGTAATGAAGGTGATTCTGTTTTTATCATCTTTCCATCATAATATAAAGAGGCCTTTTCTTATCATATCAACTTCTGCTGCCCTCTCTGTATGGGAAGCGGAGTTCTTACATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGGGACAAAAATTTACGGAGCAGCATCAGGGCAATGGATTTCTATAATGATGATGGCACAAtcacatttcaaatattattatcctCTTCTGATATTGTAACTGagGATTTACATGCTCTACAATGCATAGCATGGgaagtaataataattgatgagTGCCAAAGCCCCCGAATTTCAAGACACTTTGACAATATCAAGATGCTAACATCTAATATGAGGCTACTTCTTGTTAGTGGACAAATCAAGGAATGCTCAGCTGACTACCTCAACCTGCTTTCCCTCCTTGATTCTGGATCTCATGCAATAAACAATGATCAATTGGAGACTGAATTGCCTACTAGCATTCCTATGTTGAAGAAACTACTAGCACAATATGTTGCATACGAGTGCAAGAAAGGCTCCTCTAGGTTTATAGAGTATTGGGTTCCTGCCATGCTTTCCAATTTGCAACTTGAGCAGTATTGTTCTATGCTGCTTTCAAACAAAGTGTTCTTATGCTCAGGTCTGAAGACTGACCCTATTGATGCCCTCCGTGACCTGATTATCTCAACAAAAAAGTGTTGTAACCATCCTTATCTCCTGGATCAATCACTTCATAGTTTTGTCACAAAAGAGCGTCCTATTGAAGAGTATTTGGATATTGGAATAAAGGCAAGCGGAAAACTGCAACTTCttgaaaaaattcttattgaaGTAAAAAACCATGGGCTGAGAGCAATGATACTATTTGAGTCAGCTGGTGGTTCTGGATCTATTGGAAATATTTTGGATGACGTTGTCTGTCAGAGATTTGGTAAAGACTGTTATGTACGTTATGGTAGAGGCTATAAGCCTACAAGGAAGCAAGCTGCTTTAGACATGTTTAATGACAAAGCGGGTGGAAAATTTGTCTTCTTGATTGACAATCGTTCTTGTGTTCCCAGCATTAAGCTCTCCTCGGTGGAcactattatattatttgatagtGATTGGGACTCACAAAATGACTTGAGAGCGCTACAAAGAATGTCTATAAGCTCACAGTTTGAACAGTTAACAGTTTTCAGATTGTATTCATCTTTCACTATTGAAGAGAAGGTTTTGATGCTTGCAAAGGAGGGTATAGCTCTTGATAGCAATATGCAGTGCATAAACCAGAGTACTTGTCACACCCTGCTGAAGTGGGACGCATCCTATCTGTTCAATAAGCTTGATGACTTACATGCCTCTGACATTTCAGTCTCTGCTACAGACATTTCATCTGATCAGTCATTTCTACATGACGTAATTTGTGAATTATCAAGCCAACTACCTTGTGGGAATGACACTGATTGTCATAACAGCTCATTCATACTGAAAGTGGAGCAGAATGGAGGAGTATACtccaaaaacaatatattgCTAGGAGAGAGGTCGATGAAGAAGTTGGATAGTCGACTCTCTGCTTTTTCCTGGACTAATCTTTTTGAAAGAAGGAATCCTCGGtggaaatttttatctatttcttcTCAGAGGATCAGGAAAAAAGTCAAATACTGTGATCAATTACTACAAAACTCTGAATTTGAAGATGTTACTTTGGGAAAGAGGAGGACGGTGTCCAAGGAGGATATTGTTGGTCCCATGCATGTGAATTCAAGGttgaagaacaagaagaaacaaagtgTTGTCAATAAAACAAGTAAAGTGAATGACAATAATATGGCTGACTCAAAGATCCATGATTCCATACCCGTGCGTCCTTCATGTAGTCAAATGAAGAGATTATCTGCATCAGATGTGGATTCTGTAGAACAAAGTGAACTGCTTCATGTGCCGAAGAGCACTGAATTCTTGCCAAAGCCAGATATATCAGGTCTCTGTGATGTTCTTAGATTTTCGAAAGAAATCAAGGCTGCTGCCCTCAAGATTCTCAAGTATATATTGAAACATTATGATGTCGATTGGCATAAAGTTTCTACTGTGCAAGCTTTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTGTGTTAAAACACAAGATTGATAAAAAGGAATCGCTTGCACTTGCCAAACTGCACTTACATTTTGACTGTAAGGATGATGAAGCCACATATGTATACTCAAAACTCAAGACGATTAAGAAGATTCTGTCAAGATATTTACAAAAGCCCATACATGTTGAGAAATGTTATATAAAGGGTACATGCTCCAAGACACCAGAAAGGACAGGATTGGTGGAGGAGGAGATGCAAACAGGCTTCAAGGGTCCtgatatttcttgttttgtgGAATCTGTCACAGACGACCTGGATCTTAAATGCAAGTCTCCTCTGCGAGGCCAGAATTGTGTAGATAAACTTCCTTCTACGACTCCTGATGTTTGTCAAATTAAAGCAGATGCTCTCTCCTTGCAATTGGATgcagaaaatgacaaaatgaaTGCTCTGGCCTCAGAAATAGTAGaagtttctttcctttgtgATCAGAATGAAGCTCCAAACCCTAGTAAGGATCCTTGTACTAGTATAACTGTCACGTATCCTCTGGATAGTTTGAGTCCTGTCATAAATGCGGAGACTTTAGATTTTGTTGGGGAAGCTTGTGAAGATGCTCAACTCTTAAAGAATGATGTGGGTGCTGGTGACAACTCTATGAATGTGTTTGCTCATCCTGAGCAGCTTAACCGTGCTGAGGTAGATGCTATAACTTTCACCAGCGCTGCTGTTACTCAGGAGAAACAAGTATGTGATGAGTCTACTGTTTTGGAGTATACTAATACAACTGCACCTGGCTCACCATATTTGCCCCCTTCACATGGAAATTTGGGGCCACTGCCTCAGAATATTGGAGATTGTTTCAACAATGATGAGGCTGAACTAATTGATCCGCTGGAACCATTCAATTCCTCTTTAGTGCAATCCACGTTGAATGTGCCGCAGCAACCCTGCGTTGGTCTACCCACGAGGGAAAATGCCATGCACGTTCCATTCGACAGTACTGCTAATCCAGGATATTTGAGCATCGATCCGTTTCATGCTCCCTCTGTGACATCTGAAATGCCTGATTTTCCTTGCTCAGTTCCATTGCAAATTGAAATGGAAAGAATACAAAAGGAAGCGGAAGAAGCCATTGAAATACATAACAAAGCAGCATTGCAGCTCCGTTCTGACTTCGAAAAAGATAGTGAGAAGATACGTGTAAAGTATGATAAATTGCTTCAGAATGTTGATAGTACACTAGCACTAAAGGGAAAGGAGCTCGAGACAAATTACAACACAGTTCATGCAAATACGTTATTGGCCGAGGCATGGTTACGTAATTGTGAAGACAACGAAATGGCATGGTTGGAATGTACAGAACAAGTGGCAGTACCCAATTTCTCGAGTCCTCAGTTATCAATGAACCAGACGGGTCATATGCCCGCTGATAGACTTGAACAATATTCGGGAGGCCTACCCATAAATTACCCATACGTAGCTCCTCAAGTGTTGGCGGTTAATCCTTCAACAGCCTTTGCAGAAATCAGCTCGGTTAGACAATGCTTTAGTCCCCCGAGTCTGTTCTCGGGAAGTCTACGTAGTGACTTTGACTTGCGAGCCCCAGCCCCACATCTAAGATTCTCTGTGCCAGCTACGTCTTCAATGCCCCATCATAATGTGCCAATCACATGGAGCGGGATATCGGACAAGCAACTGCTACTTGATTCATTCAATTGCGGAGACATCAGTAATGCTGAGTA 4949 0.3985 MIMKHIDIQRCLEKKMPKRGKLKVDNGMILASEPEKFNKSVDRSLDGTSKKTRMDARKYREFARSRLKRGNVSEEESEFRCSLELTKDDAQVDPHMRDGIAGGDGVCYECMHGGVLLHCHGKGCQRRYHPSCLDPPLNYVPPGVWHCPWCVKKKIELGVYSISHGIESIWDVREVMENEVMERQYLVKYQDLAHAHNRWIPEKYILLEAPKRLAKFNRKVEVIRWKREWTVPHRLLLKRLIVLPKQYDEHFDGQGDKSSNCHYEWLVKWTGLGYDHITWELDDASFMTSSGGMKLIADYESRHKKVERLSNPSEAYEQVKASSAELTELPAGDSPGLRDHHLSYVNKLCMYWHEGQSALVVDEKVDQERVMKVILFLSSFHHNIKRPFLIISTSAALSVWEAEFLHLAPSANLVVYKGDKNLRSSIRAMDFYNDDGTITFQILLSSSDIVTEDLHALQCIAWEVIIIDECQSPRISRHFDNIKMLTSNMRLLLVSGQIKECSADYLNLLSLLDSGSHAINNDQLETELPTSIPMLKKLLAQYVAYECKKGSSRFIEYWVPAMLSNLQLEQYCSMLLSNKVFLCSGLKTDPIDALRDLIISTKKCCNHPYLLDQSLHSFVTKERPIEEYLDIGIKASGKLQLLEKILIEVKNHGLRAMILFESAGGSGSIGNILDDVVCQRFGKDCYVRYGRGYKPTRKQAALDMFNDKAGGKFVFLIDNRSCVPSIKLSSVDTIILFDSDWDSQNDLRALQRMSISSQFEQLTVFRLYSSFTIEEKVLMLAKEGIALDSNMQCINQSTCHTLLKWDASYLFNKLDDLHASDISVSATDISSDQSFLHDVICELSSQLPCGNDTDCHNSSFILKVEQNGGVYSKNNILLGERSMKKLDSRLSAFSWTNLFERRNPRWKFLSISSQRIRKKVKYCDQLLQNSEFEDVTLGKRRTVSKEDIVGPMHVNSRLKNKKKQSVVNKTSKVNDNNMADSKIHDSIPVRPSCSQMKRLSASDVDSVEQSELLHVPKSTEFLPKPDISGLCDVLRFSKEIKAAALKILKYILKHYDVDWHKVSTVQAFEISVCWLAASVLKHKIDKKESLALAKLHLHFDCKDDEATYVYSKLKTIKKILSRYLQKPIHVEKCYIKGTCSKTPERTGLVEEEMQTGFKGPDISCFVESVTDDLDLKCKSPLRGQNCVDKLPSTTPDVCQIKADALSLQLDAENDKMNALASEIVEVSFLCDQNEAPNPSKDPCTSITVTYPLDSLSPVINAETLDFVGEACEDAQLLKNDVGAGDNSMNVFAHPEQLNRAEVDAITFTSAAVTQEKQVCDESTVLEYTNTTAPGSPYLPPSHGNLGPLPQNIGDCFNNDEAELIDPLEPFNSSLVQSTLNVPQQPCVGLPTRENAMHVPFDSTANPGYLSIDPFHAPSVTSEMPDFPCSVPLQIEMERIQKEAEEAIEIHNKAALQLRSDFEKDSEKIRVKYDKLLQNVDSTLALKGKELETNYNTVHANTLLAEAWLRNCEDNEMAWLECTEQVAVPNFSSPQLSMNQTGHMPADRLEQYSGGLPINYPYVAPQVLAVNPSTAFAEISSVRQCFSPPSLFSGSLRSDFDLRAPAPHLRFSVPATSSMPHHNVPITWSGISDKQLLLDSFNCGDISNAE 1649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01966 1649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 157 IPR013083 -
Bva13g01966 1649 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3 HOMOLOG 1374 1621 - -
Bva13g01966 1649 ProSiteProfiles Chromo and chromo shadow domain profile. 164 219 IPR000953 -
Bva13g01966 1649 ProSiteProfiles Chromo and chromo shadow domain profile. 235 311 IPR000953 -
Bva13g01966 1649 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3 HOMOLOG 109 1172 - -
Bva13g01966 1649 Pfam SNF2-related domain 374 549 IPR000330 GO:0005524|GO:0140658
Bva13g01966 1649 ProSitePatterns Zinc finger PHD-type signature. 107 150 IPR019786 -
Bva13g01966 1649 Gene3D - 336 553 IPR038718 -
Bva13g01966 1649 Gene3D - 1429 1509 - -
Bva13g01966 1649 SMART PHD_3 106 151 IPR001965 -
Bva13g01966 1649 Coils Coil 1436 1456 - -
Bva13g01966 1649 Gene3D - 164 221 - -
Bva13g01966 1649 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1374 1621 - -
Bva13g01966 1649 SUPERFAMILY Chromo domain-like 226 302 IPR016197 -
Bva13g01966 1649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 514 IPR027417 -
Bva13g01966 1649 SUPERFAMILY FYVE/PHD zinc finger 103 154 IPR011011 -
Bva13g01966 1649 Coils Coil 1202 1222 - -
Bva13g01966 1649 Gene3D - 554 788 IPR027417 -
Bva13g01966 1649 Gene3D - 224 302 - -
Bva13g01966 1649 SUPERFAMILY Chromo domain-like 123 221 IPR016197 -
Bva13g01966 1649 ProSiteProfiles Zinc finger PHD-type profile. 104 153 IPR019787 -
Bva13g01966 1649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 812 IPR027417 -
Bva13g01966 1649 SMART chromo_7 228 304 IPR000953 -
Bva13g01966 1649 SMART chromo_7 163 221 IPR000953 -
Bva13g01966 1649 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 109 1172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01966 Bva-Chr13 15826788 15840145 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva13g01966 SNF2_N 1.1e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01966 - K11643 gmx:100813574 1360.51