Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01964 ATGGAAACAGTCACCAGCAAGATCAATGGCCACTATGCTGCAGCCTCCACTGAGAGCTTCTGCTTGTCTAGTGCCAATGGAGGAGCAGTAGCAGCGGCTGACCCGTTAAATTGGGGAGCGGCGGCTGAGTCGCTCAAAGGCAGCCATTTGGACGAGGTGAAGCGCATGGTGGCCGAGTACCGGAAGCCGTTGGTGCGCCTTGGAGGCGAGACACTCACGGTTTCCCAGGTTGCTGCCATCGCCGCACATGACAAAGGCGTTAAGGTTGAGCTGTCGGAGTCGGCTAGAGCCGGCGTTAAGGCGAGCAGTGACTGGGTCATGAACAGCATGGACAACGGTACCGATAGCTATGGTGTCACCACTGGCTTTGGTGCTACATCACACAGAAGAACCAAACAAGGTGCTGCTCTCCAGAAGGAGCTCATTCGGTTTTTGAACGCTGGAATATTTGGCAACGGAACAGAGACATGTCACACTCTGCCCCACACCGCAACCAGAGCAGCCATGCTTGTTAGAATCAACACTCTCCTCCAAGGTTACTCTGGCATTAGATTTGAGATTCTAGAAGCAATCACCAAGCTCATAAACAACAACATCACCCCGTGCTTGCCACTTCGTGGTACCATAACAGCTTCCGGTGATCTTGTTCCTCTTTCTTACATCGCTGGTTTACTAATTGGCCGACCAAATTCCAAAGCTGTCGGGCCCTCTGGAGAAATCCTCAATGCCAAGGAAGCTTTCCAAAACGCCGGCATTGAATCTGACTTCTTTGAATTGCAACCCAAGGAAGGGCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGCTATGGCTTCCATGGTTCTTTTCGACGCTAACATATTGGCCGTGCTGTCAGAAGTTCTATCAGCAATTTTCGCTGAAGTGATGCAAGGGAAGCCCGAATTCACTGATCATTTGACGCATAAATTGAAGCACCATCCTGGGCAAATCGAAGCTGCTGCTATCATGGAACACATTTTGGATGGAAGCTCCTATGTTAAAGCTGCTAAGAAGTTGCATGAGATGGACCCATTGCAGAAGCCTAAACAGGATCGCTATGCCCTTCGAACTTCACCGCAATGGCTCGGCCCTCAGATTGAAGTGATCAGATTTGCAACGAAATCAATCGAGAGAGAGATAAACTCTGTGAATGATAACCCTTTGATTGATGTTTCAAGGAATAAGGCTTTGCATGGTGGGAACTTCCAGGGAACCCCAATTGGTGTCTCCATGGACAATACCCGTTTGGCTCTTGCTTCAATTGGCAAACTCATGTTTGCCCAATTCTCTGAGCTTGTCAATGATTTCTACAACAATGGGTTGCCATCGAATCTCACTGCGAGCAGAAACCCCAGCTTGGATTATGGTTTCAAGGGGGCTGAGATTGCCATGGCATCTTACTGCTCGGAGCTCCAATACCTTGCAAACCCAGTTACAACCCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGGAAAACAAAGGAAGCTATTGAGATCCTGCAGCTCATGTCTTCCACATTCTTGGTTGCAATTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACAGTCAAGAACACTGTTAGCCAAGTTGCAAAGAGAACACTCACCACGGGTGTCAACGGAGAACTCCACCCTTCTAGATTTGCAGAGAAGGACTTGCTCAAAGTGGTTGACAGGGAATATGTATTTGCCTATGCCGATGACCCCTGCAGCACCACTTACCCATTGATGCAGAAACTAAGGCAAGTTCTTGTGGACCATGCATTAGTCAAtggagaaaatgagaagaattCCAACACATCCATCTTTCAGAAGATTGCAACTTTCGAGGAAGAGTTGAAGACTCTATTGCCAAAGGAAATCGAAGGAGCAAGATTGGCATGCGAGAATGGCAACTCAGCAATTCCAAACAGGATTAAGGAGTGCAGGTCTTACCCATTATACAAGTTTGCCAGAGAGCAACTCGGAACTGCGTTGCTAACAGGAGAAAAGGTGACCTCCCCAGGAGAGGAGTGTGACAAAGTGTTCACAGCAATATGCCAGGGTAAGATCATTGATCCTCTGCTGGAATGCCTAGGAGAGTGGAACGGTGCACCTCTTCCAATCTGCTA 2177 0.4782 METVTSKINGHYAAASTESFCLSSANGGAVAAADPLNWGAAAESLKGSHLDEVKRMVAEYRKPLVRLGGETLTVSQVAAIAAHDKGVKVELSESARAGVKASSDWVMNSMDNGTDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGIFGNGTETCHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAVGPSGEILNAKEAFQNAGIESDFFELQPKEGLALVNGTAVGSAMASMVLFDANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTKEAIEILQLMSSTFLVAICQAIDLRHLEENLKNTVKNTVSQVAKRTLTTGVNGELHPSRFAEKDLLKVVDREYVFAYADDPCSTTYPLMQKLRQVLVDHALVNGENEKNSNTSIFQKIATFEEELKTLLPKEIEGARLACENGNSAIPNRIKECRSYPLYKFAREQLGTALLTGEKVTSPGEECDKVFTAICQGKIIDPLLECLGEWNGAPLPIC 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01964 725 Gene3D - 538 659 IPR023144 -
Bva13g01964 725 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 207 223 IPR022313 GO:0016841
Bva13g01964 725 PANTHER HISTIDINE AMMONIA-LYASE 29 725 IPR001106 -
Bva13g01964 725 Pfam Aromatic amino acid lyase 72 548 IPR001106 -
Bva13g01964 725 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 34 714 IPR005922 GO:0005737|GO:0006559|GO:0016841
Bva13g01964 725 SUPERFAMILY L-aspartase-like 34 725 IPR008948 GO:0003824
Bva13g01964 725 Gene3D - 25 271 IPR024083 -
Bva13g01964 725 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 29 725 - -
Bva13g01964 725 CDD PAL-HAL 70 535 IPR001106 -
Bva13g01964 725 Gene3D Fumarase/aspartase (Central domain) 272 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01964 Bva-Chr13 15817985 15821646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01964 30 725 Monolignol Biosynthesis Gene Families AT2G37040 85.057 0.0 1260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01964 K10775 - gmx:100803857 1280.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01964 13 15817985 15821646 Bva03g01115 03 10453975 10458187 ECH
Bva13g01964 13 15817985 15821646 Bva13g01964 13 15817985 15821646 ECH