Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01961 ATGTCCACCTCTGCTGCTTCTTTAGCTCTTCCTACTTTGACTTCCAAATCTCAATCACTCTCATGGTCGAAACAAGCGTTGTTCTCTCCCCAGTATGCTTCTTCAGTGTCTTTGAGACTTAATGCGAAACCCATACCTATTTCTGCTTCATTTCTCCACTTGGACAGAGCGTCTACGAGTTTGTCATCTCGTTTCGTCCGCAACGTATCCCTTTCTTCTCAGTTCGACCAAGAAGAGGAAACCTTCAGTGATGGAGACGAACCCAGCCACTCCCCGGACCTTAAGCTCTTTGTAGGTAATCTTCCTTTCAACGTTGACAGTGCCCAGTTGGCTGATTTGTTCGGAAGCGCTGGAAATGTAGAGATGGTTGAGGTAATTTATGATAGAATGACCGGAAGAAGCAAGGGATTTGGTTTTGTGACAATGTCATCCGCTGAGGAAGTTGAAGCCGCTACTCGGCAATTCAATGGCTATGAACTAGATGGAAGGCCATTGAGAGTAAATTCGGGACCTCCTCCTCCTCGGAGGGAAAATTCCTCCTTTAGAGGTTCCAGAGGTGGCCCTGTTTCAGACACAGGAAACCGTGTTCATGTAGGTAATCTCGCATGGGGTGTTGATAACTTGGCACTTGAATCATTGTTTGGTGAGCTAGGGAAGGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGGTCTAGAGGCTTTGGGTTTGTGACATACAGTAGTGCTGAAGAGGTTAACAATGCCATTGAGTCCTTAAATGGCGTGGACTTGAATGGCAGATCTATTCGGGTGTCATTAGCAGATGCTAGGCCAAGGCCTGCGTTTTG 836 0.4653 MSTSAASLALPTLTSKSQSLSWSKQALFSPQYASSVSLRLNAKPIPISASFLHLDRASTSLSSRFVRNVSLSSQFDQEEETFSDGDEPSHSPDLKLFVGNLPFNVDSAQLADLFGSAGNVEMVEVIYDRMTGRSKGFGFVTMSSAEEVEAATRQFNGYELDGRPLRVNSGPPPPRRENSSFRGSRGGPVSDTGNRVHVGNLAWGVDNLALESLFGELGKVLEAKVIYDRESGRSRGFGFVTYSSAEEVNNAIESLNGVDLNGRSIRVSLADARPRPAF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01961 278 MobiDBLite consensus disorder prediction 160 193 - -
Bva13g01961 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Bva13g01961 278 SMART rrm1_1 95 168 IPR000504 GO:0003723
Bva13g01961 278 SMART rrm1_1 195 268 IPR000504 GO:0003723
Bva13g01961 278 Gene3D - 66 191 IPR012677 -
Bva13g01961 278 Gene3D - 192 277 IPR012677 -
Bva13g01961 278 SUPERFAMILY RNA-binding domain, RBD 88 193 IPR035979 GO:0003676
Bva13g01961 278 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 278 - -
Bva13g01961 278 PANTHER OS02G0815200 PROTEIN 1 278 - -
Bva13g01961 278 CDD RRM_HP0827_like 95 168 - -
Bva13g01961 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
Bva13g01961 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
Bva13g01961 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Bva13g01961 278 SUPERFAMILY RNA-binding domain, RBD 190 275 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01961 Bva-Chr13 15790267 15792800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01961 184 274 Eukaryotic Initiation Factors Gene Family AT4G34110 32.609 4.45e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01961 - - cit:102621789 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01961 13 15790267 15792800 Bva13g01961 13 15790267 15792800 ECH