Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01960 ATGGCTTCTGGTAGCTCAAGATCTGTTCGGTCTGTAAGGTTTGAGGATGATCTTGAAACACAGAATTTAAAAGCGAGAAAAGAAAGTGACTTATCCATGCTAGCAGATAAGTTGAAGGGCAAGGTGCTGCACAGGAAGGATGCTATAGGCGAGTCCTTAGGGGGAAAAGAACTTTCCAGGGTGTTCTCTGAGGATTATGATGCAGCTGAGAAATTGATATTGGATCCTAGGGGACATAGAATTAACAGATGGAACAAAGTATTTTTAGTGGCATGTTTGGTTTCCTTGTTTGTGGATCCCCTATTCTTTTACTTGCCAGTGGCTACCAAAGACAAGTGCATTGATATGTCTCCTACCCTCGCCGTGCTTGTCACCATAATTCGGTCTACGGTTGACACATTTTACATTATTCAGATTTTTGTTCGGTTTCAAACTGCTTATGTTGCTCCTTCCTCTCGTGTTTTTGGTAGAGGAGAGCTCGTTCTAGACCCTTCAAAGATTGCATCAAGATACCTTAGCAAAGATTTCTGGTTTGACCTATTGGCTGCCCTGCCTCTCCCTCAGGTGTTGATTTGGGCAGTCATTCCAAATCTAAAGGCATCGCAAATGATTGCTTCAAGGCAGGTCCTACGCCTCGCTTCTATTTTCCAGTATTTATTGAGGCTATATCTCATCTTCCCTTTGTCATCTGAAATTGTGGAGGCAAAGGGTGTAATGATGGAAAAAGCCTGGGCTGGGGCAGCATATAACCTGATGCTCTATATGCTGGCAAGTCATGTTTTGGGATCGTCTTGGTACGTGCTATCAATTGAACGACAGGATGAGTGTTGGAAGAAAGCCTGTAGTCTTGAGAGGCCAGATTGCCAGTATTATTATCTTGAATGTAAAAGTGTAGGTGACCCTGCTAGGGCAGCTTGGTTCAGAAGAAGCAATCTTTCACTCATATGTGATCAGGACAgcaatttcttcaactttggCATTTTTGCTGATGCTCTCACTTTGGACATTACTagctcaaacttcttcaacaAATACTACTATTGTCTTTGGTGGGGACTGAAAAATCTTAGCTCTCTAGGACAGAATCTCTTCACAAGCACTCATATTGCAGAGATAAATTTTGCTGTAATCATTGCAATTCTTGGGTTGGTGCTTTTTGCATTGCTCATAGGCAATATGCAAACATACTTGCAATCTACGACGATGCGACTTGAAGAATGGAGAATCAAGAAAACAGACACAGAACGATGGATGCATCACAGGCAGCTACCCAATCACTTGAAGCAAAACGTGCGACGCTATGACCAATTCAGATGGGTTGCTACTCGCGGAGTTGACGAGGAAACCATTCTCACAAATCTCCCCGTTGATCTCAGACGAGACATCAAGCGCCACCTCTGCCTTAATCTAGTCCGACAAGTACCACTGTTTGATCAAATGGACGAGAGGATGCTAGATGCGATATGTGAAAGACTGAAGCCTTCACTGGGCACAGAAGGAACTTGCCTAGTTCGAGAGGGTGACCCCGTGAATGAAATGCTGTTCATTGTCCGAGGGCGTTTAGATTCTTACACCACAAACGGTGGCAGAACGGGGTTCTTCAATTCCTGCAGAATAGGCCCCGGCGACTTCTGCGGGGAGGAGCTGCTGCCATGGGCATTGGACCCTCGTCCGAGCATTGTTCTTCCATCATCAACTCGCACAGTGAAAGCAATCACACAAGTGGAAGCTTTTGCTCTAATAGCAGAGGACTTGAAATTCGTGGCAGCCCAATTCCGAAGGTTACACAGCAAACAACTGAGGTACACGTTCAGGTTTCACTCCCACCAATGGAGGACATGGGCTGCTTGCTTTATACAAGCAGCTTGGTTTAGATataagagaaggaaagaggCAACCGAGATGAGGAAAATGGACAAGTTGATGCTGCAATGGCATTGCTATCAAAGTGCCATGGAAATGGAACGTTTCTCTGCACCTCTCACTCTGCAGTCCCAAACCAGCTACCAGTCTGCTACTATGTATGCACCAAATGTGGGAGCCACCCCAAGAATAGGAGGGAGCTTGCGATACGGTGCCGATCTTAACATTCTCGGTACATTAAGAAAACCCATCGAACCAGATTTTACAGTTGAAGATATATG 2144 0.4394 MASGSSRSVRSVRFEDDLETQNLKARKESDLSMLADKLKGKVLHRKDAIGESLGGKELSRVFSEDYDAAEKLILDPRGHRINRWNKVFLVACLVSLFVDPLFFYLPVATKDKCIDMSPTLAVLVTIIRSTVDTFYIIQIFVRFQTAYVAPSSRVFGRGELVLDPSKIASRYLSKDFWFDLLAALPLPQVLIWAVIPNLKASQMIASRQVLRLASIFQYLLRLYLIFPLSSEIVEAKGVMMEKAWAGAAYNLMLYMLASHVLGSSWYVLSIERQDECWKKACSLERPDCQYYYLECKSVGDPARAAWFRRSNLSLICDQDSNFFNFGIFADALTLDITSSNFFNKYYYCLWWGLKNLSSLGQNLFTSTHIAEINFAVIIAILGLVLFALLIGNMQTYLQSTTMRLEEWRIKKTDTERWMHHRQLPNHLKQNVRRYDQFRWVATRGVDEETILTNLPVDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLGTEGTCLVREGDPVNEMLFIVRGRLDSYTTNGGRTGFFNSCRIGPGDFCGEELLPWALDPRPSIVLPSSTRTVKAITQVEAFALIAEDLKFVAAQFRRLHSKQLRYTFRFHSHQWRTWAACFIQAAWFRYKRRKEATEMRKMDKLMLQWHCYQSAMEMERFSAPLTLQSQTSYQSATMYAPNVGATPRIGGSLRYGADLNILGTLRKPIEPDFTVEDI 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01960 714 ProSiteProfiles cAMP/cGMP binding motif profile. 476 561 IPR000595 -
Bva13g01960 714 Gene3D Helix hairpin bin 403 467 - -
Bva13g01960 714 SMART cnmp_10 476 607 IPR000595 -
Bva13g01960 714 Pfam Ion transport protein 84 403 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bva13g01960 714 Gene3D Jelly Rolls 474 594 IPR014710 -
Bva13g01960 714 SUPERFAMILY cAMP-binding domain-like 406 598 IPR018490 -
Bva13g01960 714 CDD CAP_ED 476 607 IPR000595 -
Bva13g01960 714 Pfam Cyclic nucleotide-binding domain 499 585 IPR000595 -
Bva13g01960 714 PRINTS EAG/ELK/ERG potassium channel family signature 256 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva13g01960 714 PRINTS EAG/ELK/ERG potassium channel family signature 389 398 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva13g01960 714 PRINTS EAG/ELK/ERG potassium channel family signature 439 446 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva13g01960 714 PRINTS EAG/ELK/ERG potassium channel family signature 345 362 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva13g01960 714 PRINTS EAG/ELK/ERG potassium channel family signature 371 382 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva13g01960 714 PRINTS EAG/ELK/ERG potassium channel family signature 139 148 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva13g01960 714 PANTHER PROTEIN CNGC15A 12 711 - -
Bva13g01960 714 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 711 - -
Bva13g01960 714 Gene3D - 87 400 - -
Bva13g01960 714 SUPERFAMILY Voltage-gated potassium channels 75 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01960 Bva-Chr13 15785872 15788860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01960 50 712 Ion Channels AT2G28260 65.008 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01960 K05391 - gmx:100804375 1091.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01960 13 15785872 15788860 Bva13g01960 13 15785872 15788860 ECH