Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01956 ATGATTACGTTTATGGACTCAAAGGAGAAATTGAAGGAGATAGAAAAATGTTTGGACCCTCAGTTATGGCATGCCTGCGCCGGCGGCATGGTACAAATGCCGGCGGTGAACGCTAAGGTGTTCTACTTCCCTCAAGGCCACGCCGAGCATGCATGTGGACCTGTGGACTTCAGAAACTGCCCCAGGGTTCCACCTTGCATTCTATGCAGAGTTGCTGCGATCAAATACATGGCTGATCCTGAGACAGACGAGGTGTATGTGAAACTCAGGCTTGTTCCTGTGAATGCTAATGATGGTGGTtatgacgatgatggcattggAGGAATGAATGGATCTGAAAGTCAAGATAAACCTGCTTCATTTGCAAAAACATTGACACAGTCCGATGCCAACAACGGTGGTGGGTTTTCTGTTCCTAGATATTGTGCTGAGACGATATTTCCTCGTTTAGACTATTCGGCGGATCCCCCTGTTCAGACCATCCTAGCTAAGGATGTCCATGGGGAAACATGGAAATTCAGGCACATTTACCGAGGCACACCAAGGCGGCATCTTTTGACGACTGGCTGGAGTAGTTTTGTGAATCATAAGAAGCTGGTAGCAGGGGATTCAATTGTCTTCCTAAGAGCTGAAAATGGGGATCTTTGTGTTGGGATTCGGCGAGCTAAAAGGGGAATTGGTGGCGGACCGGAGTGTTCATCTGGGTGGAATCCGGCAGGGGGAAATTGTCCTTTGCCATATGGAGGATTCTCGGCGTTGTTGAGGGACGATGAAAACAAGTTACTGAGAAATGGTAACAACAATTCAAATGGGAGTACGCTAATGGGCAAGGGGAAAGTGAGGCCTGAAGCTGTCATTGAAGCTGTAACTCTTGTTTCCAATGCTCAATCGTTTGAGGTTGTTTACTATCCTCGGGCTAGCACACCTGAGTTTTGTGTGAAGGCCTCCTTGGTTAAAGCAGCAATGCAGATTAGGTGGGTTTCTGGAATGAGATTCAAGATGGCCTTTGAAACTGAGGATTCCTCTCGGATAAGTTGGTTCATGGGAACTATATCTTCAGTTCAGGCTGCTGATCCACATCTCTGGCCTGATTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAGCCAGATTTGCTTCAAAATGTGAAACGGGTGAGCCCGTGGCTGGTTGAATTGGTATCAAACATGCCTGCTGCCATTCATCTTTCCCCTTTCTCTCCACCAAGGAAAAAACTGAGATTGCCTCAATACCCACACCCAGATTTTGGCCTTGATGTCCAAATTTCAGTGCCAACATTTCCCAGCAATCTCCTAGGACCAAGTAACCCCTTTGGTATTCCACCAGAAAGCACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTACCTTTATCCAAACTGCAGTCAGGTCTATTTCCGGCCGGTTTCCCGCCACTTGATCACCCTGCTACTGCTACACCAACAAGGATCTTCAATAACTCCTCAACATATCAGAACCCCAGCATGAGTGATGTCTCTTGCCTACTTTCCATGTCCAATTCCCCCCACCCTCCAAAGAAACTGGATCATGTCAAGACAGAGACACCACAGCTTGTGCTTTTTGGCCAAACAATACTCACTGAGCAGCAGATATCTCTTAGTGGCTCTGGTGATACAGTCTCCCCAGTTACAGGAAATAGTTCATCTGATGGGAATGGTGATAAAGTCACTAATTTTTCTGATGGTTCTGGATCTGCTCATCATCAACAAGAACGCTCCTCTTGCGACAGGTTCCCATGGTACAAGGATACTATTAATCGTGTAGAAACCGATGCCAATTTGGAGATTGGTCACTGTAAAGTTTTCATGGAATCAGAAGATGTGGGTCGCACATTGGACCTCTCCTTGCTTGCCTCTTACGACGAACTCTATACAAGGTTAGCCGACATGTTTGGCATAGACAAATCTGAGATGCTAAGCCATCTTCTTTACCGTGACAAAACAGGGGCATTCAAACACATTGGAGATGAACCATTCAGTGAGTTCAAGAAAACAGCCAGGAGATTGACGATTCTAACGGATTCTGGCAGCGACAACGTTGgGTTATCGGGATTGCAAAAACATAGTTGTCAAACACAAAGTCAACAATTGGAGCGTGACAGTAATCAGGAAGCGCAGCAATCTTTGTCTCTCAAGATGCAGATTTTCGTGAAGACTTTGACCGGAAAGACAATCACTCTGGAGGTAGAGAGCTCCGATACCATTGATAACGTTAAGGCGAAGATCCAAGATAAAGAAGGGATTCCACTGGATCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAATCTACCCTTCATCTGGTTCTTCGTTTGAGGGGAGGTATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATCACCCTCGAGGTCGAGAGCTCCGATACCATCGATAACGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCAGACCAGCAGAGGCTCATCTTCGCTGGCAAACAATTGGAGGATGGACGAACACTTGCTGATTACAACATCCAGAAGGAATCGACTCTGCATCTTGTGCTACGATTGAGGGGTGGTATGCAGATCTTTGTAAAGACTCTAACTGGAAAAACCATCACTTTGGAGGTTGAGAGCTCGGACACGATCGACAACGTTAAAACGAAAATTCAGGACAAGGAAGGCATCCCACCTGACCAGCAGCGTTTGATCTTCGCGGGTAAGCAACTAGAAGATGGCAGAACACTCGCCGATTACAATATTCAGAAAGAGTCCACGCTTCATTTGGTACTTCGGCTCAGAGGAGGGATGCAGATATTCGTTAAGACCCTCACTGGGAAGACCGTCACTTTGGAGGTTGAGAGTTCGGATACCATCGACAACGTGAAGGCGAAAATTCAGGACAAAGAGGGTATTCCGACAGATCAGCAGCGTCTCATCTTTGCTGGGAAACAGCTCGAAGATGGTCGTACTCTTGCTGATTACAACATTCAGAAAGAATCCACGCTTCACCTTGTCCTTCGTCTTCGCGGTGGTGAATTCTG 3107 0.4689 MITFMDSKEKLKEIEKCLDPQLWHACAGGMVQMPAVNAKVFYFPQGHAEHACGPVDFRNCPRVPPCILCRVAAIKYMADPETDEVYVKLRLVPVNANDGGYDDDGIGGMNGSESQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPECSSGWNPAGGNCPLPYGGFSALLRDDENKLLRNGNNNSNGSTLMGKGKVRPEAVIEAVTLVSNAQSFEVVYYPRASTPEFCVKASLVKAAMQIRWVSGMRFKMAFETEDSSRISWFMGTISSVQAADPHLWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPAAIHLSPFSPPRKKLRLPQYPHPDFGLDVQISVPTFPSNLLGPSNPFGIPPESTPAGMQGARHAHYGLPLSKLQSGLFPAGFPPLDHPATATPTRIFNNSSTYQNPSMSDVSCLLSMSNSPHPPKKLDHVKTETPQLVLFGQTILTEQQISLSGSGDTVSPVTGNSSSDGNGDKVTNFSDGSGSAHHQQERSSCDRFPWYKDTINRVETDANLEIGHCKVFMESEDVGRTLDLSLLASYDELYTRLADMFGIDKSEMLSHLLYRDKTGAFKHIGDEPFSEFKKTARRLTILTDSGSDNVGLSGLQKHSCQTQSQQLERDSNQEAQQSLSLKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPLDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTVTLEVESSDTIDNVKAKIQDKEGIPTDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01956 1035 MobiDBLite consensus disorder prediction 549 586 - -
Bva13g01956 1035 ProSitePatterns Ubiquitin domain signature. 832 857 IPR019954 -
Bva13g01956 1035 SUPERFAMILY Ubiquitin-like 880 957 IPR029071 -
Bva13g01956 1035 CDD B3_DNA 120 221 IPR003340 GO:0003677
Bva13g01956 1035 ProSitePatterns Ubiquitin domain signature. 984 1009 IPR019954 -
Bva13g01956 1035 MobiDBLite consensus disorder prediction 549 590 - -
Bva13g01956 1035 ProSiteProfiles Ubiquitin domain profile. 958 1033 IPR000626 GO:0005515
Bva13g01956 1035 SMART B3_2 121 223 IPR003340 GO:0003677
Bva13g01956 1035 CDD Ubl_ubiquitin 958 1033 - -
Bva13g01956 1035 Gene3D - 326 400 - -
Bva13g01956 1035 SUPERFAMILY Ubiquitin-like 806 881 IPR029071 -
Bva13g01956 1035 CDD Ubl_ubiquitin 806 881 - -
Bva13g01956 1035 Gene3D - 612 697 - -
Bva13g01956 1035 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Bva13g01956 1035 SUPERFAMILY Ubiquitin-like 957 1033 IPR029071 -
Bva13g01956 1035 ProSitePatterns Ubiquitin domain signature. 756 781 IPR019954 -
Bva13g01956 1035 SUPERFAMILY Ubiquitin-like 705 805 IPR029071 -
Bva13g01956 1035 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Bva13g01956 1035 PANTHER AUXIN RESPONSE FACTOR 6 690 - -
Bva13g01956 1035 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 690 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva13g01956 1035 Pfam Auxin response factor 288 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva13g01956 1035 SUPERFAMILY DNA-binding pseudobarrel domain 114 224 IPR015300 -
Bva13g01956 1035 PRINTS Ubiquitin signature 837 857 IPR019956 -
Bva13g01956 1035 PRINTS Ubiquitin signature 816 836 IPR019956 -
Bva13g01956 1035 PRINTS Ubiquitin signature 858 879 IPR019956 -
Bva13g01956 1035 Pfam Ubiquitin family 732 803 IPR000626 GO:0005515
Bva13g01956 1035 Pfam Ubiquitin family 960 1031 IPR000626 GO:0005515
Bva13g01956 1035 Pfam Ubiquitin family 808 879 IPR000626 GO:0005515
Bva13g01956 1035 Pfam Ubiquitin family 884 955 IPR000626 GO:0005515
Bva13g01956 1035 ProSitePatterns Ubiquitin domain signature. 908 933 IPR019954 -
Bva13g01956 1035 ProSiteProfiles Ubiquitin domain profile. 882 957 IPR000626 GO:0005515
Bva13g01956 1035 ProSiteProfiles PB1 domain profile. 613 693 IPR000270 GO:0005515
Bva13g01956 1035 ProSiteProfiles Ubiquitin domain profile. 806 881 IPR000626 GO:0005515
Bva13g01956 1035 Gene3D - 883 957 - -
Bva13g01956 1035 Gene3D - 958 1035 - -
Bva13g01956 1035 Gene3D - 722 805 - -
Bva13g01956 1035 Gene3D - 806 882 - -
Bva13g01956 1035 Gene3D - 119 223 IPR015300 -
Bva13g01956 1035 SMART ubq_7 882 953 IPR000626 GO:0005515
Bva13g01956 1035 SMART ubq_7 730 801 IPR000626 GO:0005515
Bva13g01956 1035 SMART ubq_7 958 1029 IPR000626 GO:0005515
Bva13g01956 1035 SMART ubq_7 806 877 IPR000626 GO:0005515
Bva13g01956 1035 CDD Ubl_ubiquitin 730 805 - -
Bva13g01956 1035 CDD Ubl_ubiquitin 882 957 - -
Bva13g01956 1035 ProSiteProfiles Ubiquitin domain profile. 730 805 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01956 Bva-Chr13 15746570 15755995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01956 15 697 B3 DNA Binding Superfamily AT4G30080 60.432 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva13g01956 B3 1.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01956 - - mnt:21407127 1122.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01956 13 15746570 15755995 Bva09g00255 09 1299444 1303059 ECH
Bva13g01956 13 15746570 15755995 Bva13g01956 13 15746570 15755995 ECH
Bva13g01956 13 15746570 15755995 Bva07g02393 07 19431631 19435142 ECH